CuGenDBv2

Gene ID	MELO3C024487
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Expansin
Genome location	chr08:9104068..9104229
RNA-Seq Expression	MELO3C024487
Synteny	MELO3C024487
Gene Ontology terms	GO:0005975 - carbohydrate metabolic process (biological process) GO:0006108 - malate metabolic process (biological process) GO:0009664 - plant-type cell wall organization (biological process) GO:0005576 - extracellular region (cellular component) GO:0009507 - chloroplast (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0046554 - malate dehydrogenase (NADP+) activity (molecular function)
InterPro domains	IPR002963 - Expansin IPR007112 - Expansin/pollen allergen, DPBB domain IPR009009 - RlpA-like protein, double-psi beta-barrel domain IPR036908 - RlpA-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8647412.1 hypothetical protein Csa_003212 [Cucumis sativus]

1.6e-23

92.45

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Query:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        +VTGTNHCPPN+NLP DNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYRR
Subjt:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

KAG6604386.1 Expansin-A32, partial [Cucurbita argyrosperma subsp. sororia]

7.6e-21

79.25

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Query:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        +VTGTNHCPPNYN   DNGGWCNPPLEHFDIAKPVF N+A++KAG++P+TYRR
Subjt:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

KAG7034536.1 Expansin-A9, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.6e-21

79.25

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Query:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        +VTGTNHCPPNYN   DNGGWCNPPLEHFDIAKPVF N+A++KAG++P+TYRR
Subjt:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

XP_004143366.1 expansin-A3 [Cucumis sativus]

1.6e-23

92.45

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Query:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        +VTGTNHCPPN+NLP DNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYRR
Subjt:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

XP_008462508.1 PREDICTED: expansin-A9-like [Cucumis melo]

3.9e-25

98.11

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Query:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYRR
Subjt:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KIG7 Expansin

7.9e-24

92.45

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Query:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        +VTGTNHCPPN+NLP DNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYRR
Subjt:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

A0A1S3CH49 Expansin

1.9e-25

98.11

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Query:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYRR
Subjt:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

A0A2P6RB60 Expansin

1.1e-20

86.54

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Query:  VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        VT TNHCPPNYNLP DNGGWCN P EHFDIAKPVFLNIAE+KAGIVP+ YRR
Subjt:  VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

A0A6J1ED76 Expansin

3.7e-21

79.25

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Query:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        +VTGTNHCPPNYN   DNGGWCNPPLEHFDIAKPVF N+A++KAG++P+TYRR
Subjt:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

A0A6J1ISW4 Expansin

2.4e-20

77.36

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Query:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        +VTGTNHCPPNYN   DNGGWCNPP EHFDIAKPVF N+A++KAG++P+TYRR
Subjt:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

SwissProt top hits

e value

%identity

Alignment

A2Y5R6 Expansin-A4

1.6e-18

69.23

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Query:  VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        VT TN CPPNY LP D+GGWCNPP  HFD+A+P FL+IA+++AGIVPV++RR
Subjt:  VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

O48818 Expansin-A4

7.4e-19

69.81

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Query:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        ++T TN CPPN   P DNGGWCNPP EHFD+A PVFL IA+++AGIVPV+YRR
Subjt:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

Q0DHB7 Expansin-A4

1.6e-18

69.23

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Query:  VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        VT TN CPPNY LP D+GGWCNPP  HFD+A+P FL+IA+++AGIVPV++RR
Subjt:  VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

Q852A1 Expansin-A7

6.7e-20

71.7

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Query:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        ++T TN CPPNY LP DNGGWCNPP  HFD+A P+FL+IAE++AGIVPV+YRR
Subjt:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

Q9LZ99 Expansin-A9

2.5e-19

69.81

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Query:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        ++T TN CPPN+N   DNGGWCNPP EHFD+A P+FL+IA++KAGIVPV+YRR
Subjt:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

Arabidopsis top hits

e value

%identity

Alignment

AT1G26770.1 expansin A10

2.0e-19

69.81

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Query:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        +VT TN CPPN  L  +NGGWCNPPLEHFD+A+PVF  IA+++AGIVPV+YRR
Subjt:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

AT1G26770.2 expansin A10

2.0e-19

69.81

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Query:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        +VT TN CPPN  L  +NGGWCNPPLEHFD+A+PVF  IA+++AGIVPV+YRR
Subjt:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

AT2G39700.1 expansin A4

5.2e-20

69.81

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Query:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        ++T TN CPPN   P DNGGWCNPP EHFD+A PVFL IA+++AGIVPV+YRR
Subjt:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

AT3G55500.1 expansin A16

2.0e-19

71.15

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Query:  VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        VT TN CPPN   P DNGGWCNPP  HFD+A PVFL IAE++AGIVP++YRR
Subjt:  VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

AT5G02260.1 expansin A9

1.8e-20

69.81

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Query:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR
        ++T TN CPPN+N   DNGGWCNPP EHFD+A P+FL+IA++KAGIVPV+YRR
Subjt:  MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR

Sequences

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CDS sequence

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ATGGTAACGGGCACCAACCACTGTCCGCCCAATTACAACCTCCCTAGAGACAATGGTGGATGGTGCAATCCCCCACTCGAGCATTTCGACATTGCGAAGCCTGTTTTCCT
CAACATTGCTGAGTTCAAGGCTGGCATTGTCCCTGTCACTTACCGCAGGTAT

mRNA sequence

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ATGGTAACGGGCACCAACCACTGTCCGCCCAATTACAACCTCCCTAGAGACAATGGTGGATGGTGCAATCCCCCACTCGAGCATTTCGACATTGCGAAGCCTGTTTTCCT
CAACATTGCTGAGTTCAAGGCTGGCATTGTCCCTGTCACTTACCGCAGGTAT

Protein sequence

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MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRRY

MELO3C024487 (gene) of Melon (DHL92) v4 genome