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MELO3C024552 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C024552
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionSmall nuclear ribonucleoprotein G
Genome locationchr08:8405336..8407046
RNA-Seq ExpressionMELO3C024552
SyntenyMELO3C024552
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0034719 - SMN-Sm protein complex (cellular component)
GO:0043186 - P granule (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR044641 - Sm-like protein Lsm7/SmG
IPR034098 - Small nuclear ribonucleoprotein G
IPR010920 - LSM domain superfamily
IPR001163 - LSM domain, eukaryotic/archaea-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFQ06099.1 probable small nuclear ribonucleoprotein g [Phtheirospermum japonicum]2.1e-2498.33Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLV+DNTVEVNGNEKTDIGMV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV

TYH32219.1 hypothetical protein ES288_A01G235200v1 [Gossypium darwinii]2.1e-2498.33Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV

XP_004143329.1 probable small nuclear ribonucleoprotein G [Cucumis sativus]1.6e-24100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV

XP_012468163.1 PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii]2.1e-2498.33Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV

XP_022132404.1 probable small nuclear ribonucleoprotein G [Momordica charantia]1.6e-24100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV

TrEMBL top hitse value%identityAlignment
A0A0A0KHH9 Small nuclear ribonucleoprotein G7.7e-25100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV

A0A1S3CHS7 Small nuclear ribonucleoprotein G7.7e-25100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV

A0A1U8LJV9 Small nuclear ribonucleoprotein G1.0e-2498.33Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV

A0A5D3C6A2 Small nuclear ribonucleoprotein G7.7e-25100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV

A0A6J1BSY9 Small nuclear ribonucleoprotein G7.7e-25100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV

SwissProt top hitse value%identityAlignment
O82221 Probable small nuclear ribonucleoprotein G3.0e-2695Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
        MSRSGQPPDLKKYMDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV

P24715 Probable small nuclear ribonucleoprotein G5.3e-2385Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
        MS SGQPP LKKYMDK+LQI L ANR+++GTLRGFDQFMNLVVDNTVEVNGNEK DIGMV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV

P62308 Small nuclear ribonucleoprotein G2.1e-1154.41Show/hide
Query:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVPHHLWIGNTILRL
        PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMV   +  GN+I+ L
Subjt:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVPHHLWIGNTILRL

Q3ZBL0 Small nuclear ribonucleoprotein G2.1e-1154.41Show/hide
Query:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVPHHLWIGNTILRL
        PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMV   +  GN+I+ L
Subjt:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVPHHLWIGNTILRL

Q9VXE0 Probable small nuclear ribonucleoprotein G1.6e-1160Show/hide
Query:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMV
        PP++KKYMDK++ +KLN  R V G LRGFD FMN+V+D+TV E   N K +IGMV
Subjt:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMV

Arabidopsis top hitse value%identityAlignment
AT2G03870.1 Small nuclear ribonucleoprotein family protein5.5e-0755Show/hide
Query:  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVE
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE
Subjt:  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVE

AT2G03870.2 Small nuclear ribonucleoprotein family protein5.5e-0755Show/hide
Query:  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVE
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE
Subjt:  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVE

AT2G23930.1 probable small nuclear ribonucleoprotein G2.1e-2795Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
        MSRSGQPPDLKKYMDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV

AT2G23930.2 probable small nuclear ribonucleoprotein G2.8e-1993.62Show/hide
Query:  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
        MDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMV
Subjt:  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV

AT3G11500.1 Small nuclear ribonucleoprotein family protein2.8e-2793.33Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
        MSRSGQPPDLKKYMDKKLQIKLNANR+V+GTLRGFDQFMNLVVDNTVEVNG++KTDIGMV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGGTCAGGACAGCCTCCGGATCTCAAAAAATATATGGACAAAAAGCTTCAGATAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGAGGCTTTGACCA
ATTTATGAATCTAGTGGTTGACAACACAGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGCCTCATCATCTTTGGATTGGGAACACCATTTTGAGACTAT
GGGACAGTTGA
mRNA sequenceShow/hide mRNA sequence
AAGCTTTCCGCCCAAATATGTCGTCATCAAGTGAACAAAATCCGAAGACTCGCTGTGACCTTCTTCTCGATTAATTAGGGTTTTTTCCATCTCTCTGACCTCTGTTCTGT
AGAAACCTCTTCACAGCTCTTTCTTTCGTTCTTCACCATGAGTAGGTCAGGACAGCCTCCGGATCTCAAAAAATATATGGACAAAAAGCTTCAGATAAAACTCAATGCTA
ATCGCTTGGTAATTGGAACTCTTCGAGGCTTTGACCAATTTATGAATCTAGTGGTTGACAACACAGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGCCT
CATCATCTTTGGATTGGGAACACCATTTTGAGACTATGGGACAGTTGAACCAACAGCTGAACCAAAATGATTCGATGAGTTCGGAAGGTGATTAGAGGAAATAGTGTGGT
CACTGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGATTGCGAACTTGGAAGTTGGTTTGATTCTTGCTGCAGATCTGTTTAATAGATCGAGTGATAAACATTCGGA
ATGTTAATGTATAATTTTGGGATGTTATGGATTTTAGTTGGAATTCTTGTACTCCATCATTCTGGACAGCCAGGATTATAATTTCAGCAGTGGGGTTTCTGTATTATTCT
GGGAAAAAGAGATTCATTGCATTGGGTAAGATTTTTCTCACGAAACATTACATTCTCTCTTCTACCAAAGCACCAAGATCCAAATTCTATTTGTTCCAAGTCTATTAGTG
CCACTGTATCATTTCGAAATGTGCTCATTAATCTTTATACAGAAAATCCAAAAGAGATAGTTTCAACAATACGTTGCC
Protein sequenceShow/hide protein sequence
MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVPHHLWIGNTILRLWDS