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MELO3C024650 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C024650
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr02:20319201..20319612
RNA-Seq ExpressionMELO3C024650
SyntenyMELO3C024650
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0035196 - production of miRNAs involved in gene silencing by miRNA (biological process)
GO:1903730 - regulation of phosphatidate phosphatase activity (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033551.1 retrotransposon protein [Cucumis melo var. makuwa]6.8e-2557.6Show/hide
Query:  SLRMNMLPEDMMSDRSSRSND----------RSSLR-----CTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTE
        S RMNM PE+MM  RS RSND          + S++       I +CMEA T+QLRTIA+WPEK ++ EDAM AQVIE +++IP+LTMAEKSKCV++V +
Subjt:  SLRMNMLPEDMMSDRSSRSND----------RSSLR-----CTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTE

Query:  KVSLMRNFIKMSDPMKVAYCRVLLG
        KVSLMR+FIKM D MK  Y R+LLG
Subjt:  KVSLMRNFIKMSDPMKVAYCRVLLG

KAA0046506.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-4685.37Show/hide
Query:  MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLM
        MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR                  RTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLM
Subjt:  MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLM

Query:  RNFIKMSDPMKVAYCRVLLGYDP
        RNFIKMSDPMKVAYCRVLLGYDP
Subjt:  RNFIKMSDPMKVAYCRVLLGYDP

KAA0048148.1 retrotransposon protein [Cucumis melo var. makuwa]7.3e-2758.59Show/hide
Query:  SLRMNMLPEDMMSDRSSRSND----------RSSLR-----CTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTE
        S RMNM P+DMM  RS RS+D          + S++       IR+CMEA T+QLRTIA+WP+KA++ ED M AQVIE +++I +LTMAEKSKCV++V +
Subjt:  SLRMNMLPEDMMSDRSSRSND----------RSSLR-----CTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTE

Query:  KVSLMRNFIKMSDPMKVAYCRVLLGYDP
        KVSLMR+FIKM D MK AYCRVLLG DP
Subjt:  KVSLMRNFIKMSDPMKVAYCRVLLGYDP

KAA0064184.1 retrotransposon protein [Cucumis melo var. makuwa]4.4e-2455.83Show/hide
Query:  RMNMLPEDMMSDRSSRSNDRSSLRC---------------TIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKV
        RMNM P+DMMS RSS+S+D   +                  IR CME  T+QLRTI +WPEKA++RED M  QVIE  +SIP+LT+AEKSKC++IV +KV
Subjt:  RMNMLPEDMMSDRSSRSNDRSSLRC---------------TIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKV

Query:  SLMRNFIKMSDPMKVAYCRV
        SL R+FIKM D MK AYC+V
Subjt:  SLMRNFIKMSDPMKVAYCRV

TYK28753.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-4685.37Show/hide
Query:  MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLM
        MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR                  RTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLM
Subjt:  MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLM

Query:  RNFIKMSDPMKVAYCRVLLGYDP
        RNFIKMSDPMKVAYCRVLLGYDP
Subjt:  RNFIKMSDPMKVAYCRVLLGYDP

TrEMBL top hitse value%identityAlignment
A0A5A7TWZ4 Retrotransposon protein2.0e-4685.37Show/hide
Query:  MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLM
        MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR                  RTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLM
Subjt:  MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLM

Query:  RNFIKMSDPMKVAYCRVLLGYDP
        RNFIKMSDPMKVAYCRVLLGYDP
Subjt:  RNFIKMSDPMKVAYCRVLLGYDP

A0A5A7TYU4 Retrotransposon protein3.5e-2758.59Show/hide
Query:  SLRMNMLPEDMMSDRSSRSND----------RSSLR-----CTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTE
        S RMNM P+DMM  RS RS+D          + S++       IR+CMEA T+QLRTIA+WP+KA++ ED M AQVIE +++I +LTMAEKSKCV++V +
Subjt:  SLRMNMLPEDMMSDRSSRSND----------RSSLR-----CTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTE

Query:  KVSLMRNFIKMSDPMKVAYCRVLLGYDP
        KVSLMR+FIKM D MK AYCRVLLG DP
Subjt:  KVSLMRNFIKMSDPMKVAYCRVLLGYDP

A0A5D3B9T0 Retrotransposon protein3.3e-2557.6Show/hide
Query:  SLRMNMLPEDMMSDRSSRSND----------RSSLR-----CTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTE
        S RMNM PE+MM  RS RSND          + S++       I +CMEA T+QLRTIA+WPEK ++ EDAM AQVIE +++IP+LTMAEKSKCV++V +
Subjt:  SLRMNMLPEDMMSDRSSRSND----------RSSLR-----CTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTE

Query:  KVSLMRNFIKMSDPMKVAYCRVLLG
        KVSLMR+FIKM D MK  Y R+LLG
Subjt:  KVSLMRNFIKMSDPMKVAYCRVLLG

A0A5D3BUJ4 Retrotransposon protein2.1e-2455.83Show/hide
Query:  RMNMLPEDMMSDRSSRSNDRSSLRC---------------TIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKV
        RMNM P+DMMS RSS+S+D   +                  IR CME  T+QLRTI +WPEKA++RED M  QVIE  +SIP+LT+AEKSKC++IV +KV
Subjt:  RMNMLPEDMMSDRSSRSNDRSSLRC---------------TIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKV

Query:  SLMRNFIKMSDPMKVAYCRV
        SL R+FIKM D MK AYC+V
Subjt:  SLMRNFIKMSDPMKVAYCRV

A0A5D3DYD1 Retrotransposon protein2.0e-4685.37Show/hide
Query:  MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLM
        MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR                  RTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLM
Subjt:  MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLM

Query:  RNFIKMSDPMKVAYCRVLLGYDP
        RNFIKMSDPMKVAYCRVLLGYDP
Subjt:  RNFIKMSDPMKVAYCRVLLGYDP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATGGATACGGAGTTCCCCGCTGTACAGCCTGAGGATGAACATGTTGCCTGAAGACATGATGAGCGATCGATCTAGCCGGTCCAACGATCGTAGCAGTTTGAGATG
TACTATTCGCGATTGTATGGAAGCTATGACTAATCAGCTAAGGACCATTGCAAAATGGCCTGAGAAAGCTATCACTCGGGAGGACGCGATGGAGGCGCAGGTGATTGAGA
ATATGCAATCCATCCCGAGCCTTACTATGGCGGAGAAGAGTAAGTGCGTCGTGATAGTGACAGAGAAGGTGTCACTCATGAGAAACTTCATCAAGATGTCTGATCCGATG
AAGGTCGCTTACTGTAGAGTCCTCCTCGGCTATGACCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATGGATACGGAGTTCCCCGCTGTACAGCCTGAGGATGAACATGTTGCCTGAAGACATGATGAGCGATCGATCTAGCCGGTCCAACGATCGTAGCAGTTTGAGATG
TACTATTCGCGATTGTATGGAAGCTATGACTAATCAGCTAAGGACCATTGCAAAATGGCCTGAGAAAGCTATCACTCGGGAGGACGCGATGGAGGCGCAGGTGATTGAGA
ATATGCAATCCATCCCGAGCCTTACTATGGCGGAGAAGAGTAAGTGCGTCGTGATAGTGACAGAGAAGGTGTCACTCATGAGAAACTTCATCAAGATGTCTGATCCGATG
AAGGTCGCTTACTGTAGAGTCCTCCTCGGCTATGACCCCTAA
Protein sequenceShow/hide protein sequence
MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPM
KVAYCRVLLGYDP