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MELO3C025455 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C025455
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr09:5588481..5588946
RNA-Seq ExpressionMELO3C025455
SyntenyMELO3C025455
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037345.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-1148.54Show/hide
Query:  MPGPSCSGFGWNDEAKCIIAEKELFDNGRYRAMGHFAETFTYVWSNE-------FIEYDGWKQYGASIHVQQGINMSKDDVRVSRLAR-VDPSERVEASM
        M GP+CSGFGWNDE KCI+AEK+LFDN   R  G FAETF  V SNE       F   DG + +       QG+++S+DDVR SR +R ++   R   S 
Subjt:  MPGPSCSGFGWNDEAKCIIAEKELFDNGRYRAMGHFAETFTYVWSNE-------FIEYDGWKQYGASIHVQQGINMSKDDVRVSRLAR-VDPSERVEASM

Query:  RVR
        R R
Subjt:  RVR

KAA0047011.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-1144.74Show/hide
Query:  MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMGHFAETFTYVWSNE-------FIEYDGWKQYGASIHVQQGI
        M GP+CSGFGWNDE KCI+AEKELFDN                          GR RA G FAETF  V SNE       F   DG K +       QG+
Subjt:  MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMGHFAETFTYVWSNE-------FIEYDGWKQYGASIHVQQGI

Query:  NMSKDDVRVSRLAR
        ++S+DDVR SR +R
Subjt:  NMSKDDVRVSRLAR

KAA0053154.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-1247.22Show/hide
Query:  MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMGHFAETFTYVWSNEFIEYDGWKQYGASIH----VQQGINMS
        M GP+CSGFGWNDE KCIIAEKELFDN                          GRYRAMG F ETF  V SNE   YD +     +        Q IN+S
Subjt:  MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMGHFAETFTYVWSNEFIEYDGWKQYGASIH----VQQGINMS

Query:  KDDVRVSR
        +DDVR SR
Subjt:  KDDVRVSR

KAA0067987.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-1144.19Show/hide
Query:  MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMGHFAETFTYVWSNE-------FIEYDGWKQYGASIHVQQGI
        M GP+CSGFGWNDE KCIIAEK+LFDN                          GR RA G FAETF  V SNE       F   DG K +  S++  QGI
Subjt:  MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMGHFAETFTYVWSNE-------FIEYDGWKQYGASIHVQQGI

Query:  NMSKDDVRVSRLARVDPSE-RVEASMRVR
        ++S+DDVR SR +R      R   S R R
Subjt:  NMSKDDVRVSRLARVDPSE-RVEASMRVR

TYK24223.1 retrotransposon protein [Cucumis melo var. makuwa]4.0e-1245.95Show/hide
Query:  MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMGHFAETFTYVWSNEFIEYDGWKQYGASIH----VQQGINMS
        M GP+CSGFGWNDE KCIIAEKELFDN                          GRYRA G F ETF  V SNE   YD +     +        Q IN+S
Subjt:  MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMGHFAETFTYVWSNEFIEYDGWKQYGASIH----VQQGINMS

Query:  KDDVRVSRLAR
        +DDVR SR +R
Subjt:  KDDVRVSRLAR

TrEMBL top hitse value%identityAlignment
A0A5A7T7A5 Retrotransposon protein5.6e-1248.54Show/hide
Query:  MPGPSCSGFGWNDEAKCIIAEKELFDNGRYRAMGHFAETFTYVWSNE-------FIEYDGWKQYGASIHVQQGINMSKDDVRVSRLAR-VDPSERVEASM
        M GP+CSGFGWNDE KCI+AEK+LFDN   R  G FAETF  V SNE       F   DG + +       QG+++S+DDVR SR +R ++   R   S 
Subjt:  MPGPSCSGFGWNDEAKCIIAEKELFDNGRYRAMGHFAETFTYVWSNE-------FIEYDGWKQYGASIHVQQGINMSKDDVRVSRLAR-VDPSERVEASM

Query:  RVR
        R R
Subjt:  RVR

A0A5A7U086 Retrotransposon protein5.6e-1244.74Show/hide
Query:  MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMGHFAETFTYVWSNE-------FIEYDGWKQYGASIHVQQGI
        M GP+CSGFGWNDE KCI+AEKELFDN                          GR RA G FAETF  V SNE       F   DG K +       QG+
Subjt:  MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMGHFAETFTYVWSNE-------FIEYDGWKQYGASIHVQQGI

Query:  NMSKDDVRVSRLAR
        ++S+DDVR SR +R
Subjt:  NMSKDDVRVSRLAR

A0A5A7UD16 Retrotransposon protein6.6e-1347.22Show/hide
Query:  MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMGHFAETFTYVWSNEFIEYDGWKQYGASIH----VQQGINMS
        M GP+CSGFGWNDE KCIIAEKELFDN                          GRYRAMG F ETF  V SNE   YD +     +        Q IN+S
Subjt:  MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMGHFAETFTYVWSNEFIEYDGWKQYGASIH----VQQGINMS

Query:  KDDVRVSR
        +DDVR SR
Subjt:  KDDVRVSR

A0A5A7VL88 Retrotransposon protein5.6e-1244.19Show/hide
Query:  MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMGHFAETFTYVWSNE-------FIEYDGWKQYGASIHVQQGI
        M GP+CSGFGWNDE KCIIAEK+LFDN                          GR RA G FAETF  V SNE       F   DG K +  S++  QGI
Subjt:  MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMGHFAETFTYVWSNE-------FIEYDGWKQYGASIHVQQGI

Query:  NMSKDDVRVSRLARVDPSE-RVEASMRVR
        ++S+DDVR SR +R      R   S R R
Subjt:  NMSKDDVRVSRLARVDPSE-RVEASMRVR

A0A5D3DKR3 Retrotransposon protein1.9e-1245.95Show/hide
Query:  MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMGHFAETFTYVWSNEFIEYDGWKQYGASIH----VQQGINMS
        M GP+CSGFGWNDE KCIIAEKELFDN                          GRYRA G F ETF  V SNE   YD +     +        Q IN+S
Subjt:  MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMGHFAETFTYVWSNEFIEYDGWKQYGASIH----VQQGINMS

Query:  KDDVRVSRLAR
        +DDVR SR +R
Subjt:  KDDVRVSRLAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGGGCCATCATGCAGTGGGTTCGGATGGAACGATGAGGCAAAGTGCATCATTGCCGAGAAGGAACTGTTTGACAACGGGAGGTATAGGGCGATGGGTCACTTTGC
AGAGACGTTCACTTACGTCTGGTCTAATGAGTTTATCGAGTACGATGGGTGGAAACAATATGGAGCTTCTATCCATGTACAGCAGGGGATTAACATGTCCAAGGATGATG
TGCGTGTCTCACGACTTGCTCGAGTGGATCCAAGCGAAAGAGTTGAAGCCAGCATGAGGGTGAGATTGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTGGGCCATCATGCAGTGGGTTCGGATGGAACGATGAGGCAAAGTGCATCATTGCCGAGAAGGAACTGTTTGACAACGGGAGGTATAGGGCGATGGGTCACTTTGC
AGAGACGTTCACTTACGTCTGGTCTAATGAGTTTATCGAGTACGATGGGTGGAAACAATATGGAGCTTCTATCCATGTACAGCAGGGGATTAACATGTCCAAGGATGATG
TGCGTGTCTCACGACTTGCTCGAGTGGATCCAAGCGAAAGAGTTGAAGCCAGCATGAGGGTGAGATTGAGATGA
Protein sequenceShow/hide protein sequence
MPGPSCSGFGWNDEAKCIIAEKELFDNGRYRAMGHFAETFTYVWSNEFIEYDGWKQYGASIHVQQGINMSKDDVRVSRLARVDPSERVEASMRVRLR