; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C025792 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C025792
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr04:18349692..18350630
RNA-Seq ExpressionMELO3C025792
SyntenyMELO3C025792
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041835.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-6159.81Show/hide
Query:  LIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKEQFDNWVRDV----
        +++CLVELVS  EWK DNGTFRP YL QLV MM EKLP  HVQATT+I+ RIKT KQTFQAIAEM G ACSGFGWN  AKCII EKE FDNWVR      
Subjt:  LIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKEQFDNWVRDV----

Query:  ----------------------------VHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCALANDTAVRQEFLCLLRE
                                    V  SRP   S+GR  SS SKR  GS+WEG++ +IHM LEC NDQLRTI EW    LANDT VRQEFL LL E
Subjt:  ----------------------------VHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCALANDTAVRQEFLCLLRE

Query:  MPDPSSLDRAMCQR
        MPD  SLDR +CQR
Subjt:  MPDPSSLDRAMCQR

KAA0043337.1 retrotransposon protein [Cucumis melo var. makuwa]3.1e-6255.23Show/hide
Query:  GTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKEQFDNWVR----
        GTL+EC +ELVS G WK DNGTFRPGYL QLV MMAEKLP+C V+ATTVI+CRIKTLK+TFQAIAE+ G ACSGFGWNDE KCI+ EKE FDNWVR    
Subjt:  GTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKEQFDNWVR----

Query:  -----------------------------------------DVVHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCALA
                                                 D V ASRP+R S+GR  SS SKRK GS+ + +++ IH+ L+  NDQLR I EWP   LA
Subjt:  -----------------------------------------DVVHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCALA

Query:  NDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIR
        ND  VR EF  +LREMP+ +SLDRA+ QR LL  MDD+R
Subjt:  NDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIR

KAA0052331.1 retrotransposon protein [Cucumis melo var. makuwa]5.1e-6563.41Show/hide
Query:  CPQTCMDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKE
        CP+TC+DEGGGG        +   G WK DNGTF PGYL QLV MMAEKL  C V+ATTVI CRIKTLK+TFQAIAEM G AC+GFGWNDE KCII +KE
Subjt:  CPQTCMDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKE

Query:  QFDNWVRDVVHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCS
         FDNWVRD V ASRP+R S  R  SS SKRK GS+ +  ++ IH+ L+  N+QLR I EWP  A AND  VR EF C+LREMP  +SLDRA+ QR LL  
Subjt:  QFDNWVRDVVHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCS

Query:  MDDIR
        MDD+R
Subjt:  MDDIR

KAA0065625.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-10578.88Show/hide
Query:  MCPQTCMDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEK
        MCPQTCMDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATT+IECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEK
Subjt:  MCPQTCMDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEK

Query:  EQFDNWVRDVVHASR-----------------------------------PTRL--------SDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRT
        EQFDNWVR  + A R                                   P R         +D RPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRT
Subjt:  EQFDNWVRDVVHASR-----------------------------------PTRL--------SDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRT

Query:  IVEWPLCALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIRSS
        IVEWPLCALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIRSS
Subjt:  IVEWPLCALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIRSS

TYK07192.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-9877.14Show/hide
Query:  MDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKEQFDNW
        MDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKE FDNW
Subjt:  MDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKEQFDNW

Query:  VRD-----------------------------------VVHASRPTRL--------SDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPL
        VR                                     V ++ P R         +D RPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWP 
Subjt:  VRD-----------------------------------VVHASRPTRL--------SDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPL

Query:  CALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIRSS
        CALANDTAV QEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIRSS
Subjt:  CALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIRSS

TrEMBL top hitse value%identityAlignment
A0A5A7TK69 Retrotransposon protein7.4e-6259.81Show/hide
Query:  LIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKEQFDNWVRDV----
        +++CLVELVS  EWK DNGTFRP YL QLV MM EKLP  HVQATT+I+ RIKT KQTFQAIAEM G ACSGFGWN  AKCII EKE FDNWVR      
Subjt:  LIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKEQFDNWVRDV----

Query:  ----------------------------VHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCALANDTAVRQEFLCLLRE
                                    V  SRP   S+GR  SS SKR  GS+WEG++ +IHM LEC NDQLRTI EW    LANDT VRQEFL LL E
Subjt:  ----------------------------VHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCALANDTAVRQEFLCLLRE

Query:  MPDPSSLDRAMCQR
        MPD  SLDR +CQR
Subjt:  MPDPSSLDRAMCQR

A0A5A7VIN0 Retrotransposon protein6.4e-10678.88Show/hide
Query:  MCPQTCMDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEK
        MCPQTCMDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATT+IECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEK
Subjt:  MCPQTCMDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEK

Query:  EQFDNWVRDVVHASR-----------------------------------PTRL--------SDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRT
        EQFDNWVR  + A R                                   P R         +D RPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRT
Subjt:  EQFDNWVRDVVHASR-----------------------------------PTRL--------SDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRT

Query:  IVEWPLCALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIRSS
        IVEWPLCALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIRSS
Subjt:  IVEWPLCALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIRSS

A0A5D3BQ46 Retrotransposon protein2.5e-6563.41Show/hide
Query:  CPQTCMDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKE
        CP+TC+DEGGGG        +   G WK DNGTF PGYL QLV MMAEKL  C V+ATTVI CRIKTLK+TFQAIAEM G AC+GFGWNDE KCII +KE
Subjt:  CPQTCMDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKE

Query:  QFDNWVRDVVHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCS
         FDNWVRD V ASRP+R S  R  SS SKRK GS+ +  ++ IH+ L+  N+QLR I EWP  A AND  VR EF C+LREMP  +SLDRA+ QR LL  
Subjt:  QFDNWVRDVVHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCS

Query:  MDDIR
        MDD+R
Subjt:  MDDIR

A0A5D3BT72 Retrotransposon protein1.5e-6255.23Show/hide
Query:  GTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKEQFDNWVR----
        GTL+EC +ELVS G WK DNGTFRPGYL QLV MMAEKLP+C V+ATTVI+CRIKTLK+TFQAIAE+ G ACSGFGWNDE KCI+ EKE FDNWVR    
Subjt:  GTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKEQFDNWVR----

Query:  -----------------------------------------DVVHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCALA
                                                 D V ASRP+R S+GR  SS SKRK GS+ + +++ IH+ L+  NDQLR I EWP   LA
Subjt:  -----------------------------------------DVVHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCALA

Query:  NDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIR
        ND  VR EF  +LREMP+ +SLDRA+ QR LL  MDD+R
Subjt:  NDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIR

A0A5D3C7A9 Retrotransposon protein5.8e-9977.14Show/hide
Query:  MDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKEQFDNW
        MDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKE FDNW
Subjt:  MDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKEQFDNW

Query:  VRD-----------------------------------VVHASRPTRL--------SDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPL
        VR                                     V ++ P R         +D RPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWP 
Subjt:  VRD-----------------------------------VVHASRPTRL--------SDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPL

Query:  CALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIRSS
        CALANDTAV QEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIRSS
Subjt:  CALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIRSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCCCCCAAACATGTATGGATGAAGGAGGAGGAGGAACTCTAATCGAGTGTTTAGTGGAGTTGGTATCTGCCGGCGAATGGAAGTTGGACAATGGTACATTTCGGCC
AGGTTACCTGACCCAACTTGTCTGCATGATGGCAGAAAAGTTGCCTAAATGTCACGTCCAAGCCACCACTGTAATAGAATGCAGAATTAAGACTTTGAAGCAAACCTTCC
AAGCTATCGCAGAAATGGGTGGGTCAGCGTGCAGTGGGTTCGGATGGAACGATGAGGCAAAGTGCATCATTGTCGAGAAGGAACAATTTGACAACTGGGTTAGGGATGTT
GTACACGCCTCACGACCTACTCGCTTGTCCGACGGTAGGCCTAGATCAAGCAGATCTAAGCGAAAGTGGGGAAGCGAGTGGGAGGGTAAAATTAAGATGATACATATGGT
CCTGGAGTGTGCGAATGATCAACTGAGGACCATCGTCGAGTGGCCTTTGTGTGCCCTTGCCAATGACACCGCAGTTCGCCAGGAGTTCTTATGTCTATTGCGTGAGATGC
CCGATCCAAGTAGTTTGGATAGGGCGATGTGCCAGAGGCTACTCTTGTGCAGTATGGATGACATACGCAGTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCCCCCAAACATGTATGGATGAAGGAGGAGGAGGAACTCTAATCGAGTGTTTAGTGGAGTTGGTATCTGCCGGCGAATGGAAGTTGGACAATGGTACATTTCGGCC
AGGTTACCTGACCCAACTTGTCTGCATGATGGCAGAAAAGTTGCCTAAATGTCACGTCCAAGCCACCACTGTAATAGAATGCAGAATTAAGACTTTGAAGCAAACCTTCC
AAGCTATCGCAGAAATGGGTGGGTCAGCGTGCAGTGGGTTCGGATGGAACGATGAGGCAAAGTGCATCATTGTCGAGAAGGAACAATTTGACAACTGGGTTAGGGATGTT
GTACACGCCTCACGACCTACTCGCTTGTCCGACGGTAGGCCTAGATCAAGCAGATCTAAGCGAAAGTGGGGAAGCGAGTGGGAGGGTAAAATTAAGATGATACATATGGT
CCTGGAGTGTGCGAATGATCAACTGAGGACCATCGTCGAGTGGCCTTTGTGTGCCCTTGCCAATGACACCGCAGTTCGCCAGGAGTTCTTATGTCTATTGCGTGAGATGC
CCGATCCAAGTAGTTTGGATAGGGCGATGTGCCAGAGGCTACTCTTGTGCAGTATGGATGACATACGCAGTTCATAG
Protein sequenceShow/hide protein sequence
MCPQTCMDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKEQFDNWVRDV
VHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIRSS