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MELO3C026040 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C026040
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr08:27489045..27489469
RNA-Seq ExpressionMELO3C026040
SyntenyMELO3C026040
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033263.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-4174.53Show/hide
Query:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENWSHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVDVG
        M EKLPGC+VRAT VID RI   K+ FQ I EM+GPACSGFGWND+ KCI+ EK++F+NWSHPAAKGLLNK F YYDEL YVF RDR TGRFAE F DVG
Subjt:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENWSHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVDVG

Query:  SNEPVG
        SNEP G
Subjt:  SNEPVG

KAA0050400.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-4075Show/hide
Query:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENW--SHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVD
        M EKLPGC+VRAT VID RI   K+ FQTI EMRGPACSGFGWND+ KCI+ EK++F+NW  SHPAAKGLLNK FSYYDEL YVF RDR T RFAE F D
Subjt:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENW--SHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVD

Query:  VGSNEPVG
        VGSNEP G
Subjt:  VGSNEPVG

KAA0055950.1 retrotransposon protein [Cucumis melo var. makuwa]9.9e-4176.85Show/hide
Query:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENW--SHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVD
        M EKLPGCRVRAT VID RI   K+ FQ I  MRGPACSGFGWND+ KCII EK++F+NW  SHPAAKGLLNK FSYYDEL YVFDRDR TGRFAE FVD
Subjt:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENW--SHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVD

Query:  VGSNEPVG
        VGS EP G
Subjt:  VGSNEPVG

TYK10971.1 retrotransposon protein [Cucumis melo var. makuwa]5.6e-5293.4Show/hide
Query:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENWSHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVDVG
        MVEKLPGCRVRATIVIDSRINIFKQIFQ IEEMRGPACSGFGWNDDAKCII EKKVFENWSHPAAKGLLNK F YYDELAYVF+RDRTTGRFAE FVDVG
Subjt:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENWSHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVDVG

Query:  SNEPVG
        SNEP G
Subjt:  SNEPVG

TYK20986.1 retrotransposon protein [Cucumis melo var. makuwa]9.9e-4175Show/hide
Query:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENW--SHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVD
        M EKLPGC+VRAT VID RI   K+ FQ I EMRGPACSGFGWND+ KCI+ EK++F+NW  SHPAAKGLLNK FSYYDEL YVF RDR TGRFAE F D
Subjt:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENW--SHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVD

Query:  VGSNEPVG
        VGSNEP G
Subjt:  VGSNEPVG

TrEMBL top hitse value%identityAlignment
A0A5A7SS54 Retrotransposon protein1.3e-4174.53Show/hide
Query:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENWSHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVDVG
        M EKLPGC+VRAT VID RI   K+ FQ I EM+GPACSGFGWND+ KCI+ EK++F+NWSHPAAKGLLNK F YYDEL YVF RDR TGRFAE F DVG
Subjt:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENWSHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVDVG

Query:  SNEPVG
        SNEP G
Subjt:  SNEPVG

A0A5A7U5A6 Retrotransposon protein6.3e-4175Show/hide
Query:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENW--SHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVD
        M EKLPGC+VRAT VID RI   K+ FQTI EMRGPACSGFGWND+ KCI+ EK++F+NW  SHPAAKGLLNK FSYYDEL YVF RDR T RFAE F D
Subjt:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENW--SHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVD

Query:  VGSNEPVG
        VGSNEP G
Subjt:  VGSNEPVG

A0A5A7ULC5 Retrotransposon protein4.8e-4176.85Show/hide
Query:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENW--SHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVD
        M EKLPGCRVRAT VID RI   K+ FQ I  MRGPACSGFGWND+ KCII EK++F+NW  SHPAAKGLLNK FSYYDEL YVFDRDR TGRFAE FVD
Subjt:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENW--SHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVD

Query:  VGSNEPVG
        VGS EP G
Subjt:  VGSNEPVG

A0A5D3CGP2 Retrotransposon protein2.7e-5293.4Show/hide
Query:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENWSHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVDVG
        MVEKLPGCRVRATIVIDSRINIFKQIFQ IEEMRGPACSGFGWNDDAKCII EKKVFENWSHPAAKGLLNK F YYDELAYVF+RDRTTGRFAE FVDVG
Subjt:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENWSHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVDVG

Query:  SNEPVG
        SNEP G
Subjt:  SNEPVG

A0A5D3DBP2 Retrotransposon protein4.8e-4175Show/hide
Query:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENW--SHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVD
        M EKLPGC+VRAT VID RI   K+ FQ I EMRGPACSGFGWND+ KCI+ EK++F+NW  SHPAAKGLLNK FSYYDEL YVF RDR TGRFAE F D
Subjt:  MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENW--SHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVD

Query:  VGSNEPVG
        VGSNEP G
Subjt:  VGSNEPVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGAAAAGTTGCCTGGATGTCGTGTCCGAGCAACCATTGTAATAGACAGTAGAATTAACATATTTAAGCAAATTTTCCAGACCATCGAAGAAATGCGGGGACCAGC
GTGCAGTGGGTTCGGCTGGAACGATGACGCAAAATGCATAATTGTGGAGAAGAAAGTCTTCGAGAATTGGTCGCATCCTGCAGCGAAGGGCCTCCTTAACAAACACTTTT
CCTATTACGACGAACTTGCATATGTGTTCGACCGAGATAGGACGACGGGTCGCTTTGCTGAGATATTCGTCGACGTCGGGTCTAACGAGCCTGTCGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGAAAAGTTGCCTGGATGTCGTGTCCGAGCAACCATTGTAATAGACAGTAGAATTAACATATTTAAGCAAATTTTCCAGACCATCGAAGAAATGCGGGGACCAGC
GTGCAGTGGGTTCGGCTGGAACGATGACGCAAAATGCATAATTGTGGAGAAGAAAGTCTTCGAGAATTGGTCGCATCCTGCAGCGAAGGGCCTCCTTAACAAACACTTTT
CCTATTACGACGAACTTGCATATGTGTTCGACCGAGATAGGACGACGGGTCGCTTTGCTGAGATATTCGTCGACGTCGGGTCTAACGAGCCTGTCGGGTAA
Protein sequenceShow/hide protein sequence
MVEKLPGCRVRATIVIDSRINIFKQIFQTIEEMRGPACSGFGWNDDAKCIIVEKKVFENWSHPAAKGLLNKHFSYYDELAYVFDRDRTTGRFAEIFVDVGSNEPVG