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MELO3C026801 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C026801
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionHistone H2A
Genome locationchr08:28456444..28456752
RNA-Seq ExpressionMELO3C026801
SyntenyMELO3C026801
Gene Ontology termsGO:0031507 - heterochromatin assembly (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR002119 - Histone H2A
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065537.1 putative Retrotransposon protein [Cucumis melo var. makuwa]4.6e-5197.06Show/hide
Query:  MHGKSNPRFLFLTPPSCTSKCQARRKYIEIPPNQTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        MHGKSNPRFLFLTPPSCTSKCQARRKYIEIPPNQTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAE 
Subjt:  MHGKSNPRFLFLTPPSCTSKCQARRKYIEIPPNQTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV

Query:  NL
         +
Subjt:  NL

KAB1216291.1 Histone H2A [Morella rubra]1.8e-1573.13Show/hide
Query:  KKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEVNL
        KKG   RRGGGGPKKKPVSRS+K  LQFPVG IG YLK G YSQRV  GA VY+A VLE L AEV L
Subjt:  KKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEVNL

TYK29281.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.6e-5197.06Show/hide
Query:  MHGKSNPRFLFLTPPSCTSKCQARRKYIEIPPNQTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        MHGKSNPRFLFLTPPSCTSKCQARRKYIEIPPNQTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAE 
Subjt:  MHGKSNPRFLFLTPPSCTSKCQARRKYIEIPPNQTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV

Query:  NL
         +
Subjt:  NL

XP_004961835.1 probable histone H2A.4 [Setaria italica]2.4e-1573.85Show/hide
Query:  KKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        KKG   RRGGGGPKKKPVSRS+K  LQFPVG IG YLK G YSQR+  GA VYLA VLE L AEV
Subjt:  KKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV

XP_008447608.1 PREDICTED: probable histone H2A.4 [Cucumis melo]1.6e-1674.63Show/hide
Query:  QTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        + KKGF  RRGG GPKKKPVSRS+K  LQFPVG IG YLKNG YSQRV  GA VYLA VLE L AEV
Subjt:  QTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV

TrEMBL top hitse value%identityAlignment
A0A1S3BHV2 Histone H2A7.9e-1774.63Show/hide
Query:  QTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        + KKGF  RRGG GPKKKPVSRS+K  LQFPVG IG YLKNG YSQRV  GA VYLA VLE L AEV
Subjt:  QTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV

A0A5A7U1I6 Histone H2A7.9e-1774.63Show/hide
Query:  QTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        + KKGF  RRGG GPKKKPVSRS+K  LQFPVG IG YLKNG YSQRV  GA VYLA VLE L AEV
Subjt:  QTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV

A0A5A7VEM3 Putative Retrotransposon protein2.2e-5197.06Show/hide
Query:  MHGKSNPRFLFLTPPSCTSKCQARRKYIEIPPNQTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        MHGKSNPRFLFLTPPSCTSKCQARRKYIEIPPNQTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAE 
Subjt:  MHGKSNPRFLFLTPPSCTSKCQARRKYIEIPPNQTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV

Query:  NL
         +
Subjt:  NL

A0A5D3E0X2 DNA/RNA polymerases superfamily protein2.2e-5197.06Show/hide
Query:  MHGKSNPRFLFLTPPSCTSKCQARRKYIEIPPNQTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        MHGKSNPRFLFLTPPSCTSKCQARRKYIEIPPNQTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAE 
Subjt:  MHGKSNPRFLFLTPPSCTSKCQARRKYIEIPPNQTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV

Query:  NL
         +
Subjt:  NL

A0A6A1VTQ6 Histone H2A8.8e-1673.13Show/hide
Query:  KKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEVNL
        KKG   RRGGGGPKKKPVSRS+K  LQFPVG IG YLK G YSQRV  GA VY+A VLE L AEV L
Subjt:  KKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEVNL

SwissProt top hitse value%identityAlignment
A2Y5G8 Probable histone H2A.42.6e-1772.31Show/hide
Query:  KKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        K G   RRGGGGPKKKPVSRS+K  LQFPVG IG YLK G YSQR+  GA VYLA VLE L AEV
Subjt:  KKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV

Q2HU65 Probable histone H2A.23.6e-1465.67Show/hide
Query:  QTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        +TKKG   R+ GGGP+KK V+RSI+  LQFPVG IG YLK G Y+QRV  GA VYLA VLE L AEV
Subjt:  QTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV

Q6L500 Probable histone H2A.42.6e-1772.31Show/hide
Query:  KKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        K G   RRGGGGPKKKPVSRS+K  LQFPVG IG YLK G YSQR+  GA VYLA VLE L AEV
Subjt:  KKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV

Q9LZ46 Probable histone H2A.43.4e-1770.15Show/hide
Query:  QTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        + KKG   RR GGGPKKKPVSRS+K  LQFPVG IG YLK G YS+RV  GA VYLA VLE L AEV
Subjt:  QTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV

Q9M531 Histone H2A4.2e-1569.23Show/hide
Query:  KKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        KKG  +R+ GGGPKKKPVSRS+K  LQFPVG IG +LK G Y+QRV  GA VYLA VLE L AEV
Subjt:  KKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV

Arabidopsis top hitse value%identityAlignment
AT3G20670.1 histone H2A 132.4e-1062.5Show/hide
Query:  GGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        G G  KK  SRS K  LQFPVG I  +LKNG Y+ RV  GA VYLA VLE L AEV
Subjt:  GGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV

AT5G02560.1 histone H2A 122.4e-1870.15Show/hide
Query:  QTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        + KKG   RR GGGPKKKPVSRS+K  LQFPVG IG YLK G YS+RV  GA VYLA VLE L AEV
Subjt:  QTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV

AT5G02560.2 histone H2A 127.1e-1869.7Show/hide
Query:  QTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAE
        + KKG   RR GGGPKKKPVSRS+K  LQFPVG IG YLK G YS+RV  GA VYLA VLE L AE
Subjt:  QTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAE

AT5G27670.1 histone H2A 71.9e-1061.82Show/hide
Query:  GGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        GG +KK VS+S+K  LQFPVG I  YLK G Y+ R   GA VYLA VLE L AEV
Subjt:  GGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV

AT5G59870.1 histone H2A 67.6e-1255.22Show/hide
Query:  QTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV
        + KK F  R+  G PK K VS+S+K  LQFPVG I  +LK G Y+QR+  GA VY+A VLE L AEV
Subjt:  QTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGGCAAAAGCAATCCTCGTTTTCTTTTTCTTACCCCACCATCCTGTACTAGTAAGTGTCAAGCAAGAAGGAAGTACATTGAGATACCTCCCAATCAGACGAAGAA
AGGCTTTACCGATAGAAGAGGCGGTGGCGGTCCTAAGAAGAAGCCTGTCTCTCGCTCTATTAAAATCGACCTCCAGTTTCCTGTCGGCGGAATCGGCTGCTACTTGAAGA
ATGGTTGTTACTCTCAACGAGTCAGAATCGGCGCTCTGGTTTACCTTGCTATTGTGCTTGAGTGCCTCCCTGCTGAGGTGAATCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCATGGCAAAAGCAATCCTCGTTTTCTTTTTCTTACCCCACCATCCTGTACTAGTAAGTGTCAAGCAAGAAGGAAGTACATTGAGATACCTCCCAATCAGACGAAGAA
AGGCTTTACCGATAGAAGAGGCGGTGGCGGTCCTAAGAAGAAGCCTGTCTCTCGCTCTATTAAAATCGACCTCCAGTTTCCTGTCGGCGGAATCGGCTGCTACTTGAAGA
ATGGTTGTTACTCTCAACGAGTCAGAATCGGCGCTCTGGTTTACCTTGCTATTGTGCTTGAGTGCCTCCCTGCTGAGGTGAATCTATAA
Protein sequenceShow/hide protein sequence
MHGKSNPRFLFLTPPSCTSKCQARRKYIEIPPNQTKKGFTDRRGGGGPKKKPVSRSIKIDLQFPVGGIGCYLKNGCYSQRVRIGALVYLAIVLECLPAEVNL