; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C027194 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C027194
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionDNA-directed RNA polymerase II subunit RPB7
Genome locationchr09:14861804..14863694
RNA-Seq ExpressionMELO3C027194
SyntenyMELO3C027194
Gene Ontology termsGO:0000291 - nuclear-transcribed mRNA catabolic process, exonucleolytic (biological process)
GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0045948 - positive regulation of translational initiation (biological process)
GO:0060213 - positive regulation of nuclear-transcribed mRNA poly(A) tail shortening (biological process)
GO:0000932 - P-body (cellular component)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0003727 - single-stranded RNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0031369 - translation initiation factor binding (molecular function)
InterPro domainsIPR003029 - S1 domain
IPR012340 - Nucleic acid-binding, OB-fold
IPR036898 - RNA polymerase Rpb7-like, N-terminal domain superfamily
IPR045113 - RNA polymerase Rpb7-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066205.1 hypothetical protein E6C27_scaffold21G002220 [Cucumis melo var. makuwa]5.1e-72100Show/hide
Query:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
        SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
Subjt:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK

Query:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
        DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Subjt:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA

XP_004150740.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus]5.1e-72100Show/hide
Query:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
        SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
Subjt:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK

Query:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
        DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Subjt:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA

XP_008466851.1 PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis melo]2.0e-76100Show/hide
Query:  MFICCRSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDG
        MFICCRSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDG
Subjt:  MFICCRSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDG

Query:  SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
        SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Subjt:  SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA

XP_038906688.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida]5.1e-72100Show/hide
Query:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
        SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
Subjt:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK

Query:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
        DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Subjt:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA

XP_038906991.1 DNA-directed RNA polymerase II subunit RPB7-like [Benincasa hispida]5.1e-72100Show/hide
Query:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
        SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
Subjt:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK

Query:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
        DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Subjt:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA

TrEMBL top hitse value%identityAlignment
A0A0A0KPS4 Uncharacterized protein2.5e-72100Show/hide
Query:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
        SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
Subjt:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK

Query:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
        DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Subjt:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA

A0A1S3CS71 DNA-directed RNA polymerase II subunit RPB79.7e-77100Show/hide
Query:  MFICCRSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDG
        MFICCRSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDG
Subjt:  MFICCRSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDG

Query:  SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
        SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Subjt:  SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA

A0A5A7VGD4 DNA-directed RNA polymerase II subunit RPB79.7e-77100Show/hide
Query:  MFICCRSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDG
        MFICCRSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDG
Subjt:  MFICCRSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDG

Query:  SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
        SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Subjt:  SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA

A0A5A7VKC6 Uncharacterized protein2.5e-72100Show/hide
Query:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
        SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
Subjt:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK

Query:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
        DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Subjt:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA

A0A6J1JSG6 DNA-directed RNA polymerase II subunit RPB7-like5.5e-7299.28Show/hide
Query:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
        SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
Subjt:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK

Query:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
        DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Subjt:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA

SwissProt top hitse value%identityAlignment
P38421 DNA-directed RNA polymerase II subunit 76.5e-7092.03Show/hide
Query:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
        SGRHGFVVAITGI+ IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ+GD+PNYTTSDGSVKIQK
Subjt:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK

Query:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
        + EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP+AA
Subjt:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA

P46279 DNA-directed RNA polymerase II subunit RPB73.7e-7397.79Show/hide
Query:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
        SGRHGFVVA+TGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSVKIQK
Subjt:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK

Query:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPS
        DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+
Subjt:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPS

P62487 DNA-directed RNA polymerase II subunit RPB74.1e-4054.48Show/hide
Query:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDVPNYTTSDGSVKIQ
        +G++GFV+A+T I+NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  + IQ
Subjt:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDVPNYTTSDGSVKIQ

Query:  KDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN
        +D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Subjt:  KDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN

Q5E9B8 DNA-directed RNA polymerase II subunit RPB74.1e-4054.48Show/hide
Query:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDVPNYTTSDGSVKIQ
        +G++GFV+A+T I+NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  + IQ
Subjt:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDVPNYTTSDGSVKIQ

Query:  KDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN
        +D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Subjt:  KDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN

Q7ZW41 DNA-directed RNA polymerase II subunit RPB74.1e-4055.22Show/hide
Query:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDVPNYTTSDGSVKIQ
        +G++GFV+A+T I+NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  V IQ
Subjt:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDVPNYTTSDGSVKIQ

Query:  KDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN
        +D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Subjt:  KDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN

Arabidopsis top hitse value%identityAlignment
AT3G22900.1 RNA polymerase Rpb7-like, N-terminal domain1.8e-1434.38Show/hide
Query:  GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEV
        G+++  T +ENIG+G I++ TG + FPV +  + F+ FKGEI+  VV  V+K G F ++GP +I   +H+     EF  G+ P +     S +IQ  + V
Subjt:  GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEV

Query:  RLKIIGT--RVDATEIFCIGTIKDDFLG
        R  ++ T  R    +   + +I  D LG
Subjt:  RLKIIGT--RVDATEIFCIGTIKDDFLG

AT4G14660.1 RNA polymerase Rpb7-like, N-terminal domain1.8e-1432.58Show/hide
Query:  GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEV
        G+ VA+T ++ IG+G IR+ TG V FPV +  + F+ FKGEI+  VV  V K G F   GP++    ++    D ++  G+ P +     S +IQ ++ V
Subjt:  GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEV

Query:  RLKIIGTR--VDATEIFCIGTIKDDFLGVIND
        R+ +IG +      E   + +++ D+LG +++
Subjt:  RLKIIGTR--VDATEIFCIGTIKDDFLGVIND

AT5G59180.1 DNA-directed RNA polymerase II4.6e-7192.03Show/hide
Query:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
        SGRHGFVVAITGI+ IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ+GD+PNYTTSDGSVKIQK
Subjt:  SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK

Query:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
        + EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP+AA
Subjt:  DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTATATGTTGTCGCAGCGGCCGGCATGGGTTTGTAGTTGCAATCACAGGAATTGAGAATATTGGGAAAGGATTGATTCGCGATGGGACTGGCTTTGTCACT
TTTCCCGTGAAATACCAATGTGTGGTGTTTCGACCATTCAAGGGAGAAATTTTGGAAGCGGTTGTTACTATGGTAAACAAGATGGGCTTCTTTGCTGAAGCTGGA
CCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACCACGTCAGATGGATCGGTTAAGATTCAG
AAGGATAGTGAAGTTCGATTAAAGATAATTGGCACTCGAGTAGATGCAACTGAAATTTTTTGTATTGGAACCATAAAAGATGACTTCTTGGGTGTGATCAATGAC
CCTTCAGCGGCTTAG
mRNA sequenceShow/hide mRNA sequence
TTTCGTTATTGAAAAATGTTTATATGTTGTCGCAGCGGCCGGCATGGGTTTGTAGTTGCAATCACAGGAATTGAGAATATTGGGAAAGGATTGATTCGCGATGGG
ACTGGCTTTGTCACTTTTCCCGTGAAATACCAATGTGTGGTGTTTCGACCATTCAAGGGAGAAATTTTGGAAGCGGTTGTTACTATGGTAAACAAGATGGGCTTC
TTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACCACGTCAGATGGA
TCGGTTAAGATTCAGAAGGATAGTGAAGTTCGATTAAAGATAATTGGCACTCGAGTAGATGCAACTGAAATTTTTTGTATTGGAACCATAAAAGATGACTTCTTG
GGTGTGATCAATGACCCTTCAGCGGCTTAG
Protein sequenceShow/hide protein sequence
MFICCRSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQ
KDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA