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MELO3C027792 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C027792
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionDNA-directed RNA polymerase I subunit RPA1-like
Genome locationchr05:17092368..17092838
RNA-Seq ExpressionMELO3C027792
SyntenyMELO3C027792
Gene Ontology termsGO:0032774 - RNA biosynthetic process (biological process)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR015410 - Domain of unknown function DUF1985


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXC30509.1 hypothetical protein L484_010758 [Morus notabilis]5.6e-1635.14Show/hide
Query:  KNAFFRHDDIITNRGIERTFKALCNEEDSLKEKLVNLYILEVFLIPKQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDVVY-LPG
        K  FFR    +    +   F+A     D    KL  LY LE  LIPK+  N+I+  +L ++DN ++F  YPWGRLSY +T  ++K++  S +   Y + G
Subjt:  KNAFFRHDDIITNRGIERTFKALCNEEDSLKEKLVNLYILEVFLIPKQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDVVY-LPG

Query:  FPLALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTL
        FP A++ WA+E IP L   +I   +++    P II WE  +   +R +
Subjt:  FPLALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTL

KAA0038287.1 DNA-directed RNA polymerase I subunit RPA1-like [Cucumis melo var. makuwa]1.4e-4386.6Show/hide
Query:  KQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDVVYLPGFPLALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSD
        K QHNHINLL+LDIL+NE+IFKGYPWGRLSYILTYQFLKKASY+DKDVVYL GFPLALVYWA EKIPR SNLD+ FGRKLA EGPPI+TWECL+TSD
Subjt:  KQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDVVYLPGFPLALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSD

XP_022132727.1 uncharacterized protein LOC111005524 [Momordica charantia]2.5e-1636.3Show/hide
Query:  FFRHDDIITNRGIERTFKALCNEEDSLKEKLVNLYILEVFLIPKQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYS-DKDVVYLPGFPL
        +F  +  I    +   F  +    D    K+  LYILE+FL+ KQ    IN  Y  ++D+++ F+GYPWGR+SY +T  F+KKA  S D   + + GFP 
Subjt:  FFRHDDIITNRGIERTFKALCNEEDSLKEKLVNLYILEVFLIPKQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYS-DKDVVYLPGFPL

Query:  ALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTLN
        AL+ WA+E IP LS     F  K+++  P +  W      +WR L+
Subjt:  ALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTLN

XP_024031030.1 uncharacterized protein LOC21394043 [Morus notabilis]5.6e-1635.14Show/hide
Query:  KNAFFRHDDIITNRGIERTFKALCNEEDSLKEKLVNLYILEVFLIPKQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDVVY-LPG
        K  FFR    +    +   F+A     D    KL  LY LE  LIPK+  N+I+  +L ++DN ++F  YPWGRLSY +T  ++K++  S +   Y + G
Subjt:  KNAFFRHDDIITNRGIERTFKALCNEEDSLKEKLVNLYILEVFLIPKQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDVVY-LPG

Query:  FPLALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTL
        FP A++ WA+E IP L   +I   +++    P II WE  +   +R +
Subjt:  FPLALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTL

XP_038891747.1 pescadillo homolog [Benincasa hispida]1.9e-1948.35Show/hide
Query:  ILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDVVYLPGFPLALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTLNRH
        +LD+E+ F+ YPWGR+S+ LT +F KK   +    ++L GFPL LVYWAFE IPRLSN  I F R++ ++GP +  WE  E +DW+ +N +
Subjt:  ILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDVVYLPGFPLALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTLNRH

TrEMBL top hitse value%identityAlignment
A0A5A7T9I0 DNA-directed RNA polymerase I subunit RPA1-like6.8e-4486.6Show/hide
Query:  KQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDVVYLPGFPLALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSD
        K QHNHINLL+LDIL+NE+IFKGYPWGRLSYILTYQFLKKASY+DKDVVYL GFPLALVYWA EKIPR SNLD+ FGRKLA EGPPI+TWECL+TSD
Subjt:  KQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDVVYLPGFPLALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSD

A0A5A7UD30 Protein Ycf2-like1.8e-1531.33Show/hide
Query:  KNAFFRHDDIITNRGIERTFKALCNEEDSLKEKLVNLYILEVFLIPKQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDV-VYLPG
        K  +F +   +T + +   F       D  K K+  LY LE+FLIPKQ+   ++  Y+ ++D++++F GYPWGR+++ L   F+ +A  S     + + G
Subjt:  KNAFFRHDDIITNRGIERTFKALCNEEDSLKEKLVNLYILEVFLIPKQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDV-VYLPG

Query:  FPLALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTLNR
        F   ++ WA+E IP LS     F  +++ E P II W       W+ L +
Subjt:  FPLALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTLNR

A0A5D3DCN3 Protein Ycf2-like1.8e-1531.33Show/hide
Query:  KNAFFRHDDIITNRGIERTFKALCNEEDSLKEKLVNLYILEVFLIPKQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDV-VYLPG
        K  +F +   +T + +   F       D  K K+  LY LE+FLIPKQ+   ++  Y+ ++D++++F GYPWGR+++ L   F+ +A  S     + + G
Subjt:  KNAFFRHDDIITNRGIERTFKALCNEEDSLKEKLVNLYILEVFLIPKQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDV-VYLPG

Query:  FPLALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTLNR
        F   ++ WA+E IP LS     F  +++ E P II W       W+ L +
Subjt:  FPLALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTLNR

A0A6J1BX50 uncharacterized protein LOC1110055241.2e-1636.3Show/hide
Query:  FFRHDDIITNRGIERTFKALCNEEDSLKEKLVNLYILEVFLIPKQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYS-DKDVVYLPGFPL
        +F  +  I    +   F  +    D    K+  LYILE+FL+ KQ    IN  Y  ++D+++ F+GYPWGR+SY +T  F+KKA  S D   + + GFP 
Subjt:  FFRHDDIITNRGIERTFKALCNEEDSLKEKLVNLYILEVFLIPKQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYS-DKDVVYLPGFPL

Query:  ALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTLN
        AL+ WA+E IP LS     F  K+++  P +  W      +WR L+
Subjt:  ALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTLN

W9SF50 DUF1985 domain-containing protein2.7e-1635.14Show/hide
Query:  KNAFFRHDDIITNRGIERTFKALCNEEDSLKEKLVNLYILEVFLIPKQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDVVY-LPG
        K  FFR    +    +   F+A     D    KL  LY LE  LIPK+  N+I+  +L ++DN ++F  YPWGRLSY +T  ++K++  S +   Y + G
Subjt:  KNAFFRHDDIITNRGIERTFKALCNEEDSLKEKLVNLYILEVFLIPKQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDVVY-LPG

Query:  FPLALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTL
        FP A++ WA+E IP L   +I   +++    P II WE  +   +R +
Subjt:  FPLALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCCGCAAAAATGCATTTTTCCGTCATGATGACATTATAACAAATAGAGGTATAGAAAGAACTTTCAAAGCGTTATGCAACGAGGAAGACTCATTGAAAGAA
AAACTAGTTAACCTCTATATTTTAGAAGTATTTTTAATTCCCAAACAGCAACACAACCACATAAATCTCCTATATCTAGACATATTGGATAATGAAAAAATCTTC
AAAGGCTATCCATGGGGGAGGTTATCATACATCCTAACATATCAGTTCTTGAAAAAAGCATCCTACAGTGACAAGGATGTTGTATACCTTCCAGGGTTTCCCCTA
GCTTTAGTCTATTGGGCTTTTGAGAAAATACCAAGACTTTCCAATTTAGATATTGAGTTTGGAAGAAAGCTTGCAACGGAAGGGCCACCAATTATAACATGGGAA
TGTCTGGAAACAAGTGACTGGAGGACTCTAAACAGACATTTTTTAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCCGCAAAAATGCATTTTTCCGTCATGATGACATTATAACAAATAGAGGTATAGAAAGAACTTTCAAAGCGTTATGCAACGAGGAAGACTCATTGAAAGAA
AAACTAGTTAACCTCTATATTTTAGAAGTATTTTTAATTCCCAAACAGCAACACAACCACATAAATCTCCTATATCTAGACATATTGGATAATGAAAAAATCTTC
AAAGGCTATCCATGGGGGAGGTTATCATACATCCTAACATATCAGTTCTTGAAAAAAGCATCCTACAGTGACAAGGATGTTGTATACCTTCCAGGGTTTCCCCTA
GCTTTAGTCTATTGGGCTTTTGAGAAAATACCAAGACTTTCCAATTTAGATATTGAGTTTGGAAGAAAGCTTGCAACGGAAGGGCCACCAATTATAACATGGGAA
TGTCTGGAAACAAGTGACTGGAGGACTCTAAACAGACATTTTTTAATCTGA
Protein sequenceShow/hide protein sequence
MVRKNAFFRHDDIITNRGIERTFKALCNEEDSLKEKLVNLYILEVFLIPKQQHNHINLLYLDILDNEKIFKGYPWGRLSYILTYQFLKKASYSDKDVVYLPGFPL
ALVYWAFEKIPRLSNLDIEFGRKLATEGPPIITWECLETSDWRTLNRHFLI