; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C027794 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C027794
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr01:17307471..17308311
RNA-Seq ExpressionMELO3C027794
SyntenyMELO3C027794
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031555.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-9677.46Show/hide
Query:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ-----------------------------------------------------SHPAAKGLLNK
        MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ                                                     SHPAAKGLLNK
Subjt:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ-----------------------------------------------------SHPAAKGLLNK

Query:  PFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVA
        PFPYYDELTYVFGRDRATGRFAETFADVGSNEP GGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVA
Subjt:  PFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVA

Query:  LEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR
        L+QTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR
Subjt:  LEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR

KAA0038065.1 retrotransposon protein [Cucumis melo var. makuwa]6.7e-9677.05Show/hide
Query:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ-----------------------------------------------------SHPAAKGLLNK
        MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ                                                     SHPAAKGLLNK
Subjt:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ-----------------------------------------------------SHPAAKGLLNK

Query:  PFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVA
        PFPYYDELTYVFGRDRATGRFAETFADVGSNEP GGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVA
Subjt:  PFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVA

Query:  LEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR
        L+QTNEQLREIAQWPARNLANDNHVRTEFFRILR+MPELTSLDR
Subjt:  LEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR

KAA0062548.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-9690.58Show/hide
Query:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVY
        MELVSMGGWKSDNGTFRP Y+AQLVRMMAEKLPGCQSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEP  GYD+FDMGDGNEDFPP+Y
Subjt:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVY

Query:  SQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR
        SQG+D+SQDDVRASRPSRA +GRTGSSGSKRKR SQRDF++EAIH+AL+QTNEQLR+IA+WPARNLANDNHVRTEFFRILREMPEL SLDR
Subjt:  SQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR

KAA0064269.1 retrotransposon protein [Cucumis melo var. makuwa]2.7e-9793.19Show/hide
Query:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVY
        MELVSMGGWKSDN TFRPGYL QLVRMMAEKLP CQSHPAAKGLLNKPFPYYDELTYVFGRDRATGRF ETFADVGSNEP GGYDRFDMGDGNEDFPPVY
Subjt:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVY

Query:  SQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR
        SQGVDISQD+VRASRPSRA +GR GSSGSKRKRGSQRDFELEAIH+AL+QTNEQLR+IA+WPARNLANDNHVRTEFFRILREMPELTSLDR
Subjt:  SQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR

TYJ96194.1 retrotransposon protein [Cucumis melo var. makuwa]5.1e-9677.05Show/hide
Query:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ-----------------------------------------------------SHPAAKGLLNK
        MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ                                                     SHPAAKGLLNK
Subjt:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ-----------------------------------------------------SHPAAKGLLNK

Query:  PFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVA
        PFPYYDELTYVFGRDRATGRFAETFADVGSNEP GGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIH+A
Subjt:  PFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVA

Query:  LEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR
        L+QTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR
Subjt:  LEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR

TrEMBL top hitse value%identityAlignment
A0A5A7T9G6 Retrotransposon protein3.2e-9677.05Show/hide
Query:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ-----------------------------------------------------SHPAAKGLLNK
        MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ                                                     SHPAAKGLLNK
Subjt:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ-----------------------------------------------------SHPAAKGLLNK

Query:  PFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVA
        PFPYYDELTYVFGRDRATGRFAETFADVGSNEP GGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVA
Subjt:  PFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVA

Query:  LEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR
        L+QTNEQLREIAQWPARNLANDNHVRTEFFRILR+MPELTSLDR
Subjt:  LEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR

A0A5A7V4P8 Retrotransposon protein1.1e-9690.58Show/hide
Query:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVY
        MELVSMGGWKSDNGTFRP Y+AQLVRMMAEKLPGCQSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEP  GYD+FDMGDGNEDFPP+Y
Subjt:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVY

Query:  SQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR
        SQG+D+SQDDVRASRPSRA +GRTGSSGSKRKR SQRDF++EAIH+AL+QTNEQLR+IA+WPARNLANDNHVRTEFFRILREMPEL SLDR
Subjt:  SQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR

A0A5A7VFF9 Retrotransposon protein1.3e-9793.19Show/hide
Query:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVY
        MELVSMGGWKSDN TFRPGYL QLVRMMAEKLP CQSHPAAKGLLNKPFPYYDELTYVFGRDRATGRF ETFADVGSNEP GGYDRFDMGDGNEDFPPVY
Subjt:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVY

Query:  SQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR
        SQGVDISQD+VRASRPSRA +GR GSSGSKRKRGSQRDFELEAIH+AL+QTNEQLR+IA+WPARNLANDNHVRTEFFRILREMPELTSLDR
Subjt:  SQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR

A0A5D3BCN9 Retrotransposon protein2.5e-9677.05Show/hide
Query:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ-----------------------------------------------------SHPAAKGLLNK
        MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ                                                     SHPAAKGLLNK
Subjt:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ-----------------------------------------------------SHPAAKGLLNK

Query:  PFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVA
        PFPYYDELTYVFGRDRATGRFAETFADVGSNEP GGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIH+A
Subjt:  PFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVA

Query:  LEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR
        L+QTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR
Subjt:  LEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR

A0A5D3CWL2 Retrotransposon protein1.1e-9677.46Show/hide
Query:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ-----------------------------------------------------SHPAAKGLLNK
        MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ                                                     SHPAAKGLLNK
Subjt:  MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ-----------------------------------------------------SHPAAKGLLNK

Query:  PFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVA
        PFPYYDELTYVFGRDRATGRFAETFADVGSNEP GGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVA
Subjt:  PFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVA

Query:  LEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR
        L+QTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR
Subjt:  LEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTAGTGTCAATGGGGGGCTGGAAATCAGATAATGGTACATTTCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCAGAGAAACTACCTGGATGTCAGTC
GCATCCTGCAGCGAAAGGACTCCTGAACAAACCATTCCCGTATTACGACGAGCTTACATATGTATTTGGTCGGGATAGGGCGACCGGTCGGTTCGCTGAGACATTTGCGG
ACGTGGGGTCTAACGAGCCAAGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGAT
GTACGTGCATCCCGACCTTCTCGCGCTTCAGATGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATGTGGC
GCTCGAGCAAACAAACGAGCAACTCAGGGAGATTGCGCAGTGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGC
CAGAACTTACGAGTTTGGATAGG
mRNA sequenceShow/hide mRNA sequence
ATGTTTAATGGAGCTAGTGTCAATGGGGGGCTGGAAATCAGATAATGGTACATTTCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCAGAGAAACTACCTGGAT
GTCAGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAACCATTCCCGTATTACGACGAGCTTACATATGTATTTGGTCGGGATAGGGCGACCGGTCGGTTCGCTGAGACA
TTTGCGGACGTGGGGTCTAACGAGCCAAGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCA
GGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGATGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATAC
ATGTGGCGCTCGAGCAAACAAACGAGCAACTCAGGGAGATTGCGCAGTGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGT
GAGATGCCAGAACTTACGAGTTTGGATAGGG
Protein sequenceShow/hide protein sequence
MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPSGGYDRFDMGDGNEDFPPVYSQGVDISQDD
VRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDR