CuGenDBv2

Gene ID	MELO3C028023
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	50S ribosomal protein L20, chloroplastic
Genome location	chr09:5980044..5980432
RNA-Seq Expression	MELO3C028023
Synteny	MELO3C028023
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

YP_004841806.1 ribosomal protein L20 [Cucumis melo subsp. melo]

3.0e-60

99.22

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Query:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
        YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
Subjt:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC

Query:  LYMISNEIIKYEDCKESSGMLKMEFSRE
        LYMISNEIIKYEDCKESSGMLKMEFS E
Subjt:  LYMISNEIIKYEDCKESSGMLKMEFSRE

YP_009317409.1 ribosomal protein L20 [Coccinia grandis]

3.7e-50

100

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Query:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
        YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
Subjt:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC

Query:  LYMISNEIIK
        LYMISNEIIK
Subjt:  LYMISNEIIK

YP_009439914.1 ribosomal protein L20 [Gynostemma caulopterum]

3.0e-52

89.84

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Query:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
        YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRG+ KRNFR LWIARINAVIR NKV YSYSRFIHNLYK+QLLLNRKILAQIAILNRNC
Subjt:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC

Query:  LYMISNEIIKYEDCKESSGMLKMEFSRE
        LYM+SNEI K +D KESSGM KMEFS E
Subjt:  LYMISNEIIKYEDCKESSGMLKMEFSRE

YP_009468884.1 ribosomal protein L20 [Gynostemma compressum]

3.4e-51

88.28

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Query:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
        YIARRRRTKIRLFASSFRGAHSRL RTITQQKIRALASAY+DRG+ KRNFR LWIARINAVIR NKV YSYSRFIHNLYK+QLLLNRKILAQIAILNRNC
Subjt:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC

Query:  LYMISNEIIKYEDCKESSGMLKMEFSRE
        LYM+SNEI K +D KESSGM KMEFS E
Subjt:  LYMISNEIIKYEDCKESSGMLKMEFSRE

YP_009752182.1 ribosomal protein L20 [Linnaeosicyos amara]

1.0e-52

92.19

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Query:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
        YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDR RQKRNFR+LWI RINAVIR NKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
Subjt:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC

Query:  LYMISNEIIKYEDCKESSGMLKMEFSRE
        LYMISNEI   ED +ESSGMLKMEFS E
Subjt:  LYMISNEIIKYEDCKESSGMLKMEFSRE

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU28 50S ribosomal protein L20, chloroplastic

1.5e-60

99.22

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Query:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
        YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
Subjt:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC

Query:  LYMISNEIIKYEDCKESSGMLKMEFSRE
        LYMISNEIIKYEDCKESSGMLKMEFS E
Subjt:  LYMISNEIIKYEDCKESSGMLKMEFSRE

A0A249RY24 50S ribosomal protein L20, chloroplastic

1.5e-60

99.22

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Query:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
        YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
Subjt:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC

Query:  LYMISNEIIKYEDCKESSGMLKMEFSRE
        LYMISNEIIKYEDCKESSGMLKMEFS E
Subjt:  LYMISNEIIKYEDCKESSGMLKMEFSRE

A0A249RZ58 50S ribosomal protein L20, chloroplastic

1.5e-60

99.22

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Query:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
        YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
Subjt:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC

Query:  LYMISNEIIKYEDCKESSGMLKMEFSRE
        LYMISNEIIKYEDCKESSGMLKMEFS E
Subjt:  LYMISNEIIKYEDCKESSGMLKMEFSRE

A0A249RZK5 50S ribosomal protein L20, chloroplastic

1.5e-60

99.22

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Query:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
        YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
Subjt:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC

Query:  LYMISNEIIKYEDCKESSGMLKMEFSRE
        LYMISNEIIKYEDCKESSGMLKMEFS E
Subjt:  LYMISNEIIKYEDCKESSGMLKMEFSRE

A0A286NG26 50S ribosomal protein L20, chloroplastic

1.5e-60

99.22

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Query:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
        YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
Subjt:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC

Query:  LYMISNEIIKYEDCKESSGMLKMEFSRE
        LYMISNEIIKYEDCKESSGMLKMEFS E
Subjt:  LYMISNEIIKYEDCKESSGMLKMEFSRE

SwissProt top hits

e value

%identity

Alignment

Q09G23 50S ribosomal protein L20, chloroplastic

1.2e-46

89.09

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Query:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
        YIARRRRTKIRLFAS+FRGAHSRLTRT TQQK+RAL SA+RDRGRQKRNFR+LWI RINAVIR NKV YSYSR IH+LYKRQLLLNRKILAQIAI NRNC
Subjt:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC

Query:  LYMISNEIIK
        LYMISNEIIK
Subjt:  LYMISNEIIK

Q3C1K6 50S ribosomal protein L20, chloroplastic

2.0e-46

82.64

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Query:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
        YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+LWI RINAVIR   V YSYSR IH+LYKRQLLLNRKILAQIAI NRNC
Subjt:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC

Query:  LYMISNEIIKYEDCKESSGML
        LYMISNEIIK  D KES+ ++
Subjt:  LYMISNEIIKYEDCKESSGML

Q4VZJ4 50S ribosomal protein L20, chloroplastic

1.9e-52

99.09

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Query:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
        YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSN VDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
Subjt:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC

Query:  LYMISNEIIK
        LYMISNEIIK
Subjt:  LYMISNEIIK

Q68RY3 50S ribosomal protein L20, chloroplastic

2.3e-47

82.64

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Query:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
        YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL S++RDR RQKRNFR+LWI RINAVIR   V YSYSR IH+LYK+QLLLNRKILAQIAI N+NC
Subjt:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC

Query:  LYMISNEIIKYEDCKESSGML
        LYMISNEIIK  D KES+G++
Subjt:  LYMISNEIIKYEDCKESSGML

Q7FNS5 50S ribosomal protein L20, chloroplastic

2.0e-46

82.64

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Query:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
        YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+LWI RINAVIR   V YSYSR IH+LYKRQLLLNRKILAQIAI NRNC
Subjt:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC

Query:  LYMISNEIIKYEDCKESSGML
        LYMISNEIIK  D KES+ ++
Subjt:  LYMISNEIIKYEDCKESSGML

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

3.4e-09

39.33

Show/hide

Query:  RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAI
        + +I   A  FRG      R   ++  +AL  +YRDR  +KR  R LWI RINA  R + V  +Y  FIH L K  + LNRK+L+++++
Subjt:  RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAI

ATCG00660.1 ribosomal protein L20

4.0e-42

79.09

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Query:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC
        YIARRRRTK+RLFASSFRGAHSRLTRT+TQQ+IRAL SA+RDRG++KR+FR+LWI RINAVI    V YSY+ FIHNLYK+QLLLNRKILAQIA+LNR+C
Subjt:  YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNC

Query:  LYMISNEIIK
        LY ISN+I K
Subjt:  LYMISNEIIK

Sequences

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CDS sequence

Show/hide CDS sequence

TATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGC
TTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGAT
TCATACACAATCTCTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCGATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAA
TACGAAGATTGCAAAGAATCCAGCGGAATGCTTAAAATGGAGTTCTCTAGAGAATGA

mRNA sequence

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GATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTG
GCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAG
ATTCATACACAATCTCTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCGATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAA
AATACGAAGATTGCAAAGAATCCAGCGGAATGCTTAAAATGGAGTTCTCTAGAGAATGA

Protein sequence

Show/hide protein sequence

YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
YEDCKESSGMLKMEFSRE

MELO3C028023 (gene) of Melon (DHL92) v4 genome