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MELO3C028024.jh1 (gene) of Melon (Harukei-3) v1.41 genome

Gene IDMELO3C028024.jh1
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCoatomer, beta' subunit
Genome locationchr01:26271349..26271748
RNA-Seq ExpressionMELO3C028024.jh1
SyntenyMELO3C028024.jh1
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0005886 - plasma membrane (cellular component)
GO:0030117 - membrane coat (cellular component)
GO:0030663 - COPI-coated vesicle membrane (cellular component)
GO:0005198 - structural molecule activity (molecular function)
InterPro domainsIPR006692 - Coatomer, WD associated region


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062345.1 coatomer subunit beta'-2-like isoform X3 [Cucumis melo var. makuwa]2.67e-4396.1Show/hide
Query:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
        MKSKELSLFYV PLLAEHIYGGTLL MC NDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
Subjt:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN

PQP98882.1 coatomer subunit beta-2 [Prunus yedoensis var. nudiflora]1.07e-3295.16Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
        AEHIYGGTLL MC NDFICFYDWAE RLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN

XP_008460512.2 PREDICTED: coatomer subunit beta'-1-like [Cucumis melo]2.13e-4696.1Show/hide
Query:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
        MKSKELSLFYV PLLAEHIYGGTLL MC NDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
Subjt:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN

XP_016900418.1 PREDICTED: coatomer subunit beta'-2-like isoform X3 [Cucumis melo]1.40e-3295.16Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
        AEHIYGGTLL MC NDFICFYDWAE RLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN

XP_016901863.1 PREDICTED: coatomer subunit beta'-1-like [Cucumis melo]1.10e-4693.51Show/hide
Query:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
        MKSKELSLFYVVPLL EHIYGGTLL MC NDFICFYDWAEGRLI RIDVNVKNLYWADSGDLVAIA+DTSFYILKYN
Subjt:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN

TrEMBL top hitse value%identityAlignment
A0A1S3CDW5 coatomer subunit beta'-1-like1.03e-4696.1Show/hide
Query:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
        MKSKELSLFYV PLLAEHIYGGTLL MC NDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
Subjt:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN

A0A1S4DWR6 coatomer subunit beta'-2-like isoform X36.80e-3395.16Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
        AEHIYGGTLL MC NDFICFYDWAE RLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN

A0A1S4E0W2 coatomer subunit beta'-1-like5.34e-4793.51Show/hide
Query:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
        MKSKELSLFYVVPLL EHIYGGTLL MC NDFICFYDWAEGRLI RIDVNVKNLYWADSGDLVAIA+DTSFYILKYN
Subjt:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN

A0A314XXX8 Coatomer subunit beta-25.18e-3395.16Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
        AEHIYGGTLL MC NDFICFYDWAE RLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN

A0A5A7V8X3 Coatomer subunit beta'-2-like isoform X31.29e-4396.1Show/hide
Query:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
        MKSKELSLFYV PLLAEHIYGGTLL MC NDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
Subjt:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN

SwissProt top hitse value%identityAlignment
Q5VQ78 Coatomer subunit beta'-12.7e-2677.78Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNVRILVMSLRS
        AE I+GG LL MC +DFICFYDWA+ RLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN  ++   L S
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNVRILVMSLRS

Q6H8D5 Coatomer subunit beta'-21.4e-2784.62Show/hide
Query:  PLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
        P  AE I+GG LL MC NDFICF+DWAEGR+IRRIDVNVKNLYWADSGDLV IASDTSFYILKYN
Subjt:  PLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN

Q6H8D6 Putative coatomer subunit beta'-31.4e-2784.62Show/hide
Query:  PLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
        P  AE I+GG LL MC NDFICF+DWAEGR+IRRIDVNVKNLYWADSGDLV IASDTSFYILKYN
Subjt:  PLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN

Q8L828 Coatomer subunit beta'-31.7e-2582.61Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNVRILVMS
        AE I+GGTLL MC NDFICFYDWAE RLI++IDV VKNLYWA+SGDLVAIASDTSFYILKYN R LV S
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNVRILVMS

Q9CAA0 Coatomer subunit beta'-11.4e-2790.32Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
        AEHI+GGTLLTMC +DFICFYDWAE RLIRRIDV VKNLYWADSGDLVAIASDTSFYILK+N
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN

Arabidopsis top hitse value%identityAlignment
AT1G79990.1 structural molecules1.0e-2890.32Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
        AEHI+GGTLLTMC +DFICFYDWAE RLIRRIDV VKNLYWADSGDLVAIASDTSFYILK+N
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN

AT1G79990.3 structural molecules1.0e-2890.32Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
        AEHI+GGTLLTMC +DFICFYDWAE RLIRRIDV VKNLYWADSGDLVAIASDTSFYILK+N
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN

AT1G79990.5 structural molecules1.0e-2890.32Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN
        AEHI+GGTLLTMC +DFICFYDWAE RLIRRIDV VKNLYWADSGDLVAIASDTSFYILK+N
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN

AT3G15980.1 Coatomer, beta' subunit1.2e-2682.61Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNVRILVMS
        AE I+GGTLL MC NDFICFYDWAE RLI++IDV VKNLYWA+SGDLVAIASDTSFYILKYN R LV S
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNVRILVMS

AT3G15980.2 Coatomer, beta' subunit1.2e-2682.61Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNVRILVMS
        AE I+GGTLL MC NDFICFYDWAE RLI++IDV VKNLYWA+SGDLVAIASDTSFYILKYN R LV S
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNVRILVMS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAGTAAGGAACTATCATTATTTTATGTTGTTCCATTGTTAGCCGAGCACATCTATGGAGGAACTCTGTTAACCATGTGTCCCAATGATTTTATATGTTTCTATGA
TTGGGCAGAGGGCAGACTGATCCGCCGTATTGATGTAAATGTGAAGAACCTTTATTGGGCTGATAGTGGTGATTTGGTGGCAATAGCCAGTGATACATCATTTTATATCC
TGAAGTACAATGTAAGAATACTTGTTATGTCGTTAAGAAGTCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAGTAAGGAACTATCATTATTTTATGTTGTTCCATTGTTAGCCGAGCACATCTATGGAGGAACTCTGTTAACCATGTGTCCCAATGATTTTATATGTTTCTATGA
TTGGGCAGAGGGCAGACTGATCCGCCGTATTGATGTAAATGTGAAGAACCTTTATTGGGCTGATAGTGGTGATTTGGTGGCAATAGCCAGTGATACATCATTTTATATCC
TGAAGTACAATGTAAGAATACTTGTTATGTCGTTAAGAAGTCGATGAAGTTCAATTGTTTTCCTTACACAATATGGATCTGAATCTTGCTTC
Protein sequenceShow/hide protein sequence
MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNVRILVMSLRSR