; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C028060 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C028060
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr03:22309481..22310804
RNA-Seq ExpressionMELO3C028060
SyntenyMELO3C028060
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025501.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-8159.52Show/hide
Query:  MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHIFAHDVKNRVIQREFVRSGETVSRH
        MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMD+ TFAILCHLLRNVAGLSSTEIVDVEEMVAMFLH+ AHD+KNRVIQREFVRSGETVSRH
Subjt:  MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHIFAHDVKNRVIQREFVRSGETVSRH

Query:  FNIVLLAVLRLYEELIKRPVPVTSNCNDQRWK--------------------------------------------------------------------
        FNI+LL VLRLYEELIKRPVPVTSNCNDQRWK                                                                    
Subjt:  FNIVLLAVLRLYEELIKRPVPVTSNCNDQRWK--------------------------------------------------------------------

Query:  ----------------------------------EMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQFRN
                                          EM YC+DV++EDEGDSTYATTTASEDIQYIETTNEWSQWRDDLA SMF +WQ RN
Subjt:  ----------------------------------EMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQFRN

KAA0032340.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.4e-8159.27Show/hide
Query:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
        MD+QTL+GVLTAFTLAQRQ+LLTLELLMNNNKRLPHTP DTRHRIR+LAYF MIHESDLVCRQST MD RTF ILCHLLRNVAGLSSTEIV+VEEMVAMF
Subjt:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF

Query:  LHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNC-----------------------NDQRW-------------------
        LH+ AHDV NR IQREFVRSGETVS HFN+VLLAV+RLYEELIKRPV    NC                       + Q W                   
Subjt:  LHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNC-----------------------NDQRW-------------------

Query:  ----------------------------------------------KEMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQF
                                                      +EMTYCDDV D DEGDS YATTTASEDI YIET NEWSQWRD+LA SMF DW+ 
Subjt:  ----------------------------------------------KEMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQF

Query:  RN
        RN
Subjt:  RN

KAA0036563.1 retrotransposon protein [Cucumis melo var. makuwa]4.6e-8554.95Show/hide
Query:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
        MD+QT++G+ T FTLAQRQILLTLELLMN+NKR+ +TP DTRHRIR+LAYFRMIHESDLVCRQSTRMDRRTFAILCHLLR V+ LSSTEIVDVEEMVAMF
Subjt:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF

Query:  LHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWK-----------------------------------------
        LH+ AHDVKNRVIQREFVRSGETVS HFN+VLLAV+RLYE+LIKRPVPVT+NCNDQRWK                                         
Subjt:  LHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWK-----------------------------------------

Query:  ------------------------------------------------------------------------------EMTYCDDVEDEDEGDSTYATTT
                                                                                      EMTYCDDV+D DEGDS YATTT
Subjt:  ------------------------------------------------------------------------------EMTYCDDVEDEDEGDSTYATTT

Query:  ASEDIQYIETTNEWSQWRDDLAASMFIDWQFRN
         SEDIQYIETTNEWSQWRD+L  SMF DWQ RN
Subjt:  ASEDIQYIETTNEWSQWRDDLAASMFIDWQFRN

KAA0058874.1 retrotransposon protein [Cucumis melo var. makuwa]4.6e-9356.4Show/hide
Query:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
        MDEQTLIGVLTAFT AQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
Subjt:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF

Query:  LHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWK-----------------------------------------
        LH+ AHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWK                                         
Subjt:  LHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWK-----------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------EMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQFRN
                    EMTYCD+VEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMF +WQ RN
Subjt:  ------------EMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQFRN

TYK19044.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]4.3e-8362.11Show/hide
Query:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
        MD+QTL+GVLTAFTLAQRQ+LLTLELLMNNNKRLPHTP DTRHRIR+LAYF MIHESDLVCRQST MD RTF ILCHLLRNVAGLSSTEIV+VEEMVAMF
Subjt:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF

Query:  LHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV-----------------------------------------------------
        LH+ AHDV NR IQREFVRSGETVS HFN+VLLAV+RLYEELIKRPV                                                     
Subjt:  LHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV-----------------------------------------------------

Query:  ---------PVTSNC---------NDQRWKEMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQFRN
                 P+   C         ++   +EMTYCDDV D DEGDS YATTTASEDI YIET NEWSQWRD+LA SMF DW+ RN
Subjt:  ---------PVTSNC---------NDQRWKEMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQFRN

TrEMBL top hitse value%identityAlignment
A0A5A7SNH9 Putative nuclease HARBI16.7e-8259.27Show/hide
Query:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
        MD+QTL+GVLTAFTLAQRQ+LLTLELLMNNNKRLPHTP DTRHRIR+LAYF MIHESDLVCRQST MD RTF ILCHLLRNVAGLSSTEIV+VEEMVAMF
Subjt:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF

Query:  LHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNC-----------------------NDQRW-------------------
        LH+ AHDV NR IQREFVRSGETVS HFN+VLLAV+RLYEELIKRPV    NC                       + Q W                   
Subjt:  LHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNC-----------------------NDQRW-------------------

Query:  ----------------------------------------------KEMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQF
                                                      +EMTYCDDV D DEGDS YATTTASEDI YIET NEWSQWRD+LA SMF DW+ 
Subjt:  ----------------------------------------------KEMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQF

Query:  RN
        RN
Subjt:  RN

A0A5A7T0Z8 Retrotransposon protein2.2e-8554.95Show/hide
Query:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
        MD+QT++G+ T FTLAQRQILLTLELLMN+NKR+ +TP DTRHRIR+LAYFRMIHESDLVCRQSTRMDRRTFAILCHLLR V+ LSSTEIVDVEEMVAMF
Subjt:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF

Query:  LHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWK-----------------------------------------
        LH+ AHDVKNRVIQREFVRSGETVS HFN+VLLAV+RLYE+LIKRPVPVT+NCNDQRWK                                         
Subjt:  LHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWK-----------------------------------------

Query:  ------------------------------------------------------------------------------EMTYCDDVEDEDEGDSTYATTT
                                                                                      EMTYCDDV+D DEGDS YATTT
Subjt:  ------------------------------------------------------------------------------EMTYCDDVEDEDEGDSTYATTT

Query:  ASEDIQYIETTNEWSQWRDDLAASMFIDWQFRN
         SEDIQYIETTNEWSQWRD+L  SMF DWQ RN
Subjt:  ASEDIQYIETTNEWSQWRDDLAASMFIDWQFRN

A0A5A7UUT3 Retrotransposon protein2.2e-9356.4Show/hide
Query:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
        MDEQTLIGVLTAFT AQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
Subjt:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF

Query:  LHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWK-----------------------------------------
        LH+ AHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWK                                         
Subjt:  LHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWK-----------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------EMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQFRN
                    EMTYCD+VEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMF +WQ RN
Subjt:  ------------EMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQFRN

A0A5D3BKS9 Retrotransposon protein5.1e-8259.52Show/hide
Query:  MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHIFAHDVKNRVIQREFVRSGETVSRH
        MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMD+ TFAILCHLLRNVAGLSSTEIVDVEEMVAMFLH+ AHD+KNRVIQREFVRSGETVSRH
Subjt:  MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHIFAHDVKNRVIQREFVRSGETVSRH

Query:  FNIVLLAVLRLYEELIKRPVPVTSNCNDQRWK--------------------------------------------------------------------
        FNI+LL VLRLYEELIKRPVPVTSNCNDQRWK                                                                    
Subjt:  FNIVLLAVLRLYEELIKRPVPVTSNCNDQRWK--------------------------------------------------------------------

Query:  ----------------------------------EMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQFRN
                                          EM YC+DV++EDEGDSTYATTTASEDIQYIETTNEWSQWRDDLA SMF +WQ RN
Subjt:  ----------------------------------EMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQFRN

A0A5D3D656 Putative nuclease HARBI12.1e-8362.11Show/hide
Query:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
        MD+QTL+GVLTAFTLAQRQ+LLTLELLMNNNKRLPHTP DTRHRIR+LAYF MIHESDLVCRQST MD RTF ILCHLLRNVAGLSSTEIV+VEEMVAMF
Subjt:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF

Query:  LHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV-----------------------------------------------------
        LH+ AHDV NR IQREFVRSGETVS HFN+VLLAV+RLYEELIKRPV                                                     
Subjt:  LHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV-----------------------------------------------------

Query:  ---------PVTSNC---------NDQRWKEMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQFRN
                 P+   C         ++   +EMTYCDDV D DEGDS YATTTASEDI YIET NEWSQWRD+LA SMF DW+ RN
Subjt:  ---------PVTSNC---------NDQRWKEMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQFRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G28730.1 unknown protein4.1e-0735.16Show/hide
Query:  IHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIK
        I+ +++ C+   RM    F  LC +L    GL S+  + ++E VA+FL I A +   R I   F  + ET+ R F+ VL A+ RL  E I+
Subjt:  IHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIK

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)2.1e-1135.11Show/hide
Query:  FRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIK
        +++++  +  C ++ RMD+  F  LC LL+    L  T  + +E  +A+FL I  H+++ R +Q  F  SGET+SRHFN VL AV+ + ++  +
Subjt:  FRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAACAAACACTTATTGGAGTTCTAACTGCATTCACGTTGGCCCAACGTCAGATTTTACTAACGTTGGAGCTATTAATGAACAACAATAAGCGTCTCCCACATAC
ACCGCCCGATACACGCCATAGAATTAGGGAGCTTGCTTACTTTCGCATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAA
TTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACATCTTCGCTCATGACGTGAAGAAC
CGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTAATAAAGAGACCTGT
TCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGGAAATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAG
AAGACATTCAGTACATTGAGACAACAAATGAGTGGTCTCAGTGGCGCGACGACCTAGCCGCATCGATGTTCATCGATTGGCAGTTCCGTAATTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGAACAAACACTTATTGGAGTTCTAACTGCATTCACGTTGGCCCAACGTCAGATTTTACTAACGTTGGAGCTATTAATGAACAACAATAAGCGTCTCCCACATAC
ACCGCCCGATACACGCCATAGAATTAGGGAGCTTGCTTACTTTCGCATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAA
TTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACATCTTCGCTCATGACGTGAAGAAC
CGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTAATAAAGAGACCTGT
TCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGGAAATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAG
AAGACATTCAGTACATTGAGACAACAAATGAGTGGTCTCAGTGGCGCGACGACCTAGCCGCATCGATGTTCATCGATTGGCAGTTCCGTAATTATTAG
Protein sequenceShow/hide protein sequence
MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHIFAHDVKN
RVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKEMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWQFRNY