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MELO3C028084 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C028084
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionPectin lyase-like superfamily protein
Genome locationchr04:20112367..20112549
RNA-Seq ExpressionMELO3C028084
SyntenyMELO3C028084
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33764.1 polygalacturonase [Cucumis melo subsp. melo]1.1e-1192.5Show/hide
Query:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
        MFHIVINGCQNVTM+G+KVLASGNSPNTDGIH QMSSNVA
Subjt:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
KAA0046810.1 polygalacturonase [Cucumis melo var. makuwa]1.1e-1192.5Show/hide
Query:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
        MFHIVINGCQNVTM+G+KVLASGNSPNTDGIH QMSSNVA
Subjt:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
KAA0068064.1 polygalacturonase [Cucumis melo var. makuwa]4.3e-13100Show/hide
Query:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
        MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
Subjt:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
TYK06443.1 polygalacturonase [Cucumis melo var. makuwa]4.3e-13100Show/hide
Query:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
        MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
Subjt:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
TYK26944.1 polygalacturonase [Cucumis melo var. makuwa]7.4e-1397.5Show/hide
Query:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
        MFHIVINGCQNVTMKG+KVLASGNSPNTDGIHVQMSSNVA
Subjt:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
TrEMBL top hitse value%identityAlignment
A0A5A7TUJ2 Polygalacturonase5.2e-1292.5Show/hide
Query:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
        MFHIVINGCQNVTM+G+KVLASGNSPNTDGIH QMSSNVA
Subjt:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
A0A5A7VKX0 Polygalacturonase2.1e-13100Show/hide
Query:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
        MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
Subjt:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
A0A5D3C3E8 Polygalacturonase2.1e-13100Show/hide
Query:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
        MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
Subjt:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
A0A5D3DTW1 Polygalacturonase3.6e-1397.5Show/hide
Query:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
        MFHIVINGCQNVTMKG+KVLASGNSPNTDGIHVQMSSNVA
Subjt:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
E5GBC3 Polygalacturonase5.2e-1292.5Show/hide
Query:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
        MFHIVINGCQNVTM+G+KVLASGNSPNTDGIH QMSSNVA
Subjt:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
SwissProt top hitse value%identityAlignment
O22818 Probable polygalacturonase At2g438601.2e-0560.53Show/hide
Query:  FHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNV
        FHIVI+   NV + G+KV A  NSPNTDGIHV+ S +V
Subjt:  FHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNV
P48979 Polygalacturonase1.0e-0976.92Show/hide
Query:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNV
        MFHIVIN  QNV M+G++V  SGNSPNTDGIHVQMSS V
Subjt:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNV
Q05967 Polygalacturonase5.9e-0555.26Show/hide
Query:  FHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNV
        FH+ +N C+N+T     V A  NSPNTDGIHV  SS+V
Subjt:  FHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNV
Q40312 Polygalacturonase9.1e-0650Show/hide
Query:  FHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNV
        FH+++ GC+N+T  G  + A G+SPNTDGIH+  S++V
Subjt:  FHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNV
Q94AJ5 Probable polygalacturonase At1g801702.6e-0551.35Show/hide
Query:  HIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNV
        HI +  C+ VT+ GLKV+A   SPNTDGIH+ +S  +
Subjt:  HIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNV
Arabidopsis top hitse value%identityAlignment
AT1G05660.1 Pectin lyase-like superfamily protein9.9e-0856.76Show/hide
Query:  HIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNV
        H+ +NGC NV ++ +K++A GNSPNTDG HVQ S+ V
Subjt:  HIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNV
AT1G65570.1 Pectin lyase-like superfamily protein2.2e-0746.15Show/hide
Query:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNV
        +FHI IN C+N+ ++ ++++A   SPNTDGIH+Q+S+++
Subjt:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNV
AT2G43860.1 Pectin lyase-like superfamily protein8.4e-0760.53Show/hide
Query:  FHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNV
        FHIVI+   NV + G+KV A  NSPNTDGIHV+ S +V
Subjt:  FHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNV
AT2G43870.1 Pectin lyase-like superfamily protein1.3e-1275Show/hide
Query:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
        MFH+VINGC NV ++G+KVLA+GNSPNTDGIHVQ SS+V+
Subjt:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
AT3G59850.1 Pectin lyase-like superfamily protein5.6e-1170Show/hide
Query:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA
        MFH+ INGC NV + G+KV A GNSPNTDGIHVQ SS V+
Subjt:  MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCATATAGTCATTAATGGTTGTCAAAATGTCACGATGAAAGGTCTTAAGGTCTTGGCCTCTGGCAATAGTCCCAACACAGACGGAATTCATGTGCAAATGTCCTC
TAATGTGGCT
mRNA sequenceShow/hide mRNA sequence
ACCCTTCAATTCTCTAACTCCAAAAATGTAGTGATCAGCGCATTGACATCACTCAATAGCCAAATGTTCCATATAGTCATTAATGGTTGTCAAAATGTCACGATGAAAGG
TCTTAAGGTCTTGGCCTCTGGCAATAGTCCCAACACAGACGGAATTCATGTGCAAATGTCCTCTAATGTGGCT
Protein sequenceShow/hide protein sequence
MFHIVINGCQNVTMKGLKVLASGNSPNTDGIHVQMSSNVA