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MELO3C028123 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C028123
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Description50S ribosomal protein L20, chloroplastic
Genome locationchr06:24300576..24300918
RNA-Seq ExpressionMELO3C028123
SyntenyMELO3C028123
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR005813 - Ribosomal protein L20
IPR035566 - Ribosomal protein L20, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
YP_004841806.1 ribosomal protein L20 [Cucumis melo subsp. melo]1.1e-53100Show/hide
Query:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
        SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
Subjt:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK

Query:  ESSGMLKMEFSGE
        ESSGMLKMEFSGE
Subjt:  ESSGMLKMEFSGE
YP_009317409.1 ribosomal protein L20 [Coccinia grandis]1.5e-42100Show/hide
Query:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
        SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Subjt:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
YP_009439914.1 ribosomal protein L20 [Gynostemma caulopterum]1.1e-4589.38Show/hide
Query:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
        SFRGAHSRLTRTITQQKIRALASAYRDRG+ KRNFR LWIARINAVIR NKV YSYSRFIHNLYK+QLLLNRKILAQIAILNRNCLYM+SNEI K +D K
Subjt:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK

Query:  ESSGMLKMEFSGE
        ESSGM KMEFSGE
Subjt:  ESSGMLKMEFSGE
YP_009468884.1 ribosomal protein L20 [Gynostemma compressum]1.2e-4487.61Show/hide
Query:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
        SFRGAHSRL RTITQQKIRALASAY+DRG+ KRNFR LWIARINAVIR NKV YSYSRFIHNLYK+QLLLNRKILAQIAILNRNCLYM+SNEI K +D K
Subjt:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK

Query:  ESSGMLKMEFSGE
        ESSGM KMEFSGE
Subjt:  ESSGMLKMEFSGE
YP_009752182.1 ribosomal protein L20 [Linnaeosicyos amara]3.8e-4692.04Show/hide
Query:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
        SFRGAHSRLTRTITQQKIRALASAYRDR RQKRNFR+LWI RINAVIR NKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEI   ED +
Subjt:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK

Query:  ESSGMLKMEFSGE
        ESSGMLKMEFSGE
Subjt:  ESSGMLKMEFSGE
TrEMBL top hitse value%identityAlignment
A0A1S4EU28 50S ribosomal protein L20, chloroplastic5.3e-54100Show/hide
Query:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
        SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
Subjt:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK

Query:  ESSGMLKMEFSGE
        ESSGMLKMEFSGE
Subjt:  ESSGMLKMEFSGE
A0A249RY24 50S ribosomal protein L20, chloroplastic5.3e-54100Show/hide
Query:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
        SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
Subjt:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK

Query:  ESSGMLKMEFSGE
        ESSGMLKMEFSGE
Subjt:  ESSGMLKMEFSGE
A0A249RZ58 50S ribosomal protein L20, chloroplastic5.3e-54100Show/hide
Query:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
        SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
Subjt:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK

Query:  ESSGMLKMEFSGE
        ESSGMLKMEFSGE
Subjt:  ESSGMLKMEFSGE
A0A249RZK5 50S ribosomal protein L20, chloroplastic5.3e-54100Show/hide
Query:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
        SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
Subjt:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK

Query:  ESSGMLKMEFSGE
        ESSGMLKMEFSGE
Subjt:  ESSGMLKMEFSGE
A0A286NG26 50S ribosomal protein L20, chloroplastic5.3e-54100Show/hide
Query:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
        SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
Subjt:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK

Query:  ESSGMLKMEFSGE
        ESSGMLKMEFSGE
Subjt:  ESSGMLKMEFSGE
SwissProt top hitse value%identityAlignment
Q09G23 50S ribosomal protein L20, chloroplastic4.6e-3987.37Show/hide
Query:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
        +FRGAHSRLTRT TQQK+RAL SA+RDRGRQKRNFR+LWI RINAVIR NKV YSYSR IH+LYKRQLLLNRKILAQIAI NRNCLYMISNEIIK
Subjt:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Q3C1K6 50S ribosomal protein L20, chloroplastic6.0e-3980.19Show/hide
Query:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
        SFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+LWI RINAVIR   V YSYSR IH+LYKRQLLLNRKILAQIAI NRNCLYMISNEIIK  D K
Subjt:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK

Query:  ESSGML
        ES+ ++
Subjt:  ESSGML
Q4VZJ4 50S ribosomal protein L20, chloroplastic7.4e-4598.95Show/hide
Query:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
        SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSN VDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Subjt:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Q68RY3 50S ribosomal protein L20, chloroplastic7.1e-4080.19Show/hide
Query:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
        SFRGAHSRLTRTITQQKIRAL S++RDR RQKRNFR+LWI RINAVIR   V YSYSR IH+LYK+QLLLNRKILAQIAI N+NCLYMISNEIIK  D K
Subjt:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK

Query:  ESSGML
        ES+G++
Subjt:  ESSGML
Q7FNS5 50S ribosomal protein L20, chloroplastic6.0e-3980.19Show/hide
Query:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK
        SFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+LWI RINAVIR   V YSYSR IH+LYKRQLLLNRKILAQIAI NRNCLYMISNEIIK  D K
Subjt:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCK

Query:  ESSGML
        ES+ ++
Subjt:  ESSGML
Arabidopsis top hitse value%identityAlignment
AT1G16740.1 Ribosomal protein L205.1e-0941.77Show/hide
Query:  FRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAI
        FRG      R   ++  +AL  +YRDR  +KR  R LWI RINA  R + V  +Y  FIH L K  + LNRK+L+++++
Subjt:  FRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAI
ATCG00660.1 ribosomal protein L209.3e-3576.84Show/hide
Query:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
        SFRGAHSRLTRT+TQQ+IRAL SA+RDRG++KR+FR+LWI RINAVI    V YSY+ FIHNLYK+QLLLNRKILAQIA+LNR+CLY ISN+I K
Subjt:  SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACA
GTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTCATACACAATCTCTACAAGAGGCAGTTGCTTCTTAATCGTAAAA
TACTTGCCCAAATCGCGATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAATACGAAGATTGCAAAGAATCCAGCGGAATGCTTAAAATGGAGTTC
TCTGGAGAATGA
mRNA sequenceShow/hide mRNA sequence
AAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGAC
AGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTCATACACAATCTCTACAAGAGGCAGTTGCTTCTTAATCGTAAA
ATACTTGCCCAAATCGCGATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAATACGAAGATTGCAAAGAATCCAGCGGAATGCTTAAAATGGAGTT
CTCTGGAGAATGA
Protein sequenceShow/hide protein sequence
SFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGMLKMEF
SGE