CuGenDBv2

Gene ID	MELO3C028131
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	40S ribosomal protein S13
Genome location	chr08:7318740..7318884
RNA-Seq Expression	MELO3C028131
Synteny	MELO3C028131
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0006508 - proteolysis (biological process) GO:0006744 - ubiquinone biosynthetic process (biological process) GO:0005829 - cytosol (cellular component) GO:0005840 - ribosome (cellular component) GO:0031314 - extrinsic component of mitochondrial inner membrane (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR009068 - S15/NS1, RNA-binding IPR023029 - Ribosomal protein S15P

Homology

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GenBank top hits

e value

%identity

Alignment

ABW90418.1 putative ribosomal protein S13 [Barentsia elongata]

7.0e-10

79.55

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Query:  LLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL
        +L +KGLA EIPEDLYHLIKK VSIRKHLERNRKDKDSK  ++L
Subjt:  LLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL

KAA0025155.1 uncharacterized protein E6C27_scaffold2405G00020 [Cucumis melo var. makuwa]

2.6e-12

95.35

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Query:  MCVFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSK
        MCVFLLLSKGLA EI EDLYHLIKKVVSIRKHLERNRKDKDSK
Subjt:  MCVFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSK

KAA0051790.1 putative ribosomal protein S13 [Cucumis melo var. makuwa]

1.4e-13

91.49

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Query:  MCVFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMV
        MCVFLLLSKGLA EIPEDLYHLIKKVVSIRKHLERNRKDKDSK   V
Subjt:  MCVFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMV

KHJ41186.1 ribosomal protein S15 [Trichuris suis]

7.0e-10

79.55

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Query:  LLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL
        +L SKGLA EIPEDLYHLIKK V+IRKHLERNRKDKDSK  ++L
Subjt:  LLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL

VDD87991.1 unnamed protein product [Enterobius vermicularis]

5.4e-10

78.26

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Query:  VFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL
        V +L SKG+A EIPEDLYHLIKK VSIRKHLERNRKDKDSK  ++L
Subjt:  VFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL

TrEMBL top hits

e value

%identity

Alignment

A0A0N4V0I2 40S ribosomal protein S13

2.6e-10

78.26

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Query:  VFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL
        V +L SKG+A EIPEDLYHLIKK VSIRKHLERNRKDKDSK  ++L
Subjt:  VFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL

A0A0N5AK96 40S ribosomal protein S13

2.6e-10

78.26

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Query:  VFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL
        V +L SKG+A EIPEDLYHLIKK VSIRKHLERNRKDKDSK  ++L
Subjt:  VFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL

A0A5A7SL06 ULP_PROTEASE domain-containing protein

1.2e-12

95.35

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Query:  MCVFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSK
        MCVFLLLSKGLA EI EDLYHLIKKVVSIRKHLERNRKDKDSK
Subjt:  MCVFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSK

A0A5A7U9F0 Putative ribosomal protein S13

6.6e-14

91.49

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Query:  MCVFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMV
        MCVFLLLSKGLA EIPEDLYHLIKKVVSIRKHLERNRKDKDSK   V
Subjt:  MCVFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMV

A0A5S6QVF7 40S ribosomal protein S13

3.4e-10

79.55

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Query:  LLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL
        +L SKGLA EIPEDLYHLIKK V+IRKHLERNRKDKDSK  ++L
Subjt:  LLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL

SwissProt top hits

e value

%identity

Alignment

P59223 40S ribosomal protein S13-1

1.0e-11

Show/hide

Query:  LLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL
        +L + GLA EIPEDLYHLIKK V+IRKHLERNRKDKDSK  ++L
Subjt:  LLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL

P59224 40S ribosomal protein S13-2

1.0e-11

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Query:  LLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL
        +L + GLA EIPEDLYHLIKK V+IRKHLERNRKDKDSK  ++L
Subjt:  LLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL

P62299 40S ribosomal protein S13

3.5e-12

73.91

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Query:  VFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL
        V +L +KG+A EIPEDLYHLIKK V+IRKHLERNRKDKDSK  ++L
Subjt:  VFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL

P62300 40S ribosomal protein S13

3.5e-12

73.91

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Query:  VFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL
        V +L +KG+A EIPEDLYHLIKK V+IRKHLERNRKDKDSK  ++L
Subjt:  VFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL

P62302 40S ribosomal protein S13

4.6e-12

77.27

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Query:  LLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL
        +L + GLA EIPEDLYHLIKK VSIRKHLERNRKDKDSK  ++L
Subjt:  LLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

7.2e-13

Show/hide

Query:  LLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL
        +L + GLA EIPEDLYHLIKK V+IRKHLERNRKDKDSK  ++L
Subjt:  LLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL

AT4G00100.1 ribosomal protein S13A

7.2e-13

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Query:  LLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL
        +L + GLA EIPEDLYHLIKK V+IRKHLERNRKDKDSK  ++L
Subjt:  LLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL

Sequences

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CDS sequence

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ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTTCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTCTCGATTAGAAAGCATTTGGAAAGAAACAG
GAAGGACAAAGACTCCAAGGTACACATGGTACTC

mRNA sequence

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ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTTCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTCTCGATTAGAAAGCATTTGGAAAGAAACAG
GAAGGACAAAGACTCCAAGGTACACATGGTACTCT

Protein sequence

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MCVFLLLSKGLASEIPEDLYHLIKKVVSIRKHLERNRKDKDSKVHMVL

MELO3C028131 (gene) of Melon (DHL92) v4 genome