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MELO3C028181 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C028181
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionGag/pol protein
Genome locationchr08:26323542..26328753
RNA-Seq ExpressionMELO3C028181
SyntenyMELO3C028181
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]3.9e-3365.57Show/hide
Query:  IPRTQFSRLGVKSDHRTVSSICFVLAISLSIFGARTPRTSIHTPGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKG
        +PRTQFSR   K   +       VL ISLSIF ART RTS HT GML   F+ GIGREASSL+GEL +DPKR KRWPM  T  ER SGVRNHWKCTCS  
Subjt:  IPRTQFSRLGVKSDHRTVSSICFVLAISLSIFGARTPRTSIHTPGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKG

Query:  NRLSLRTSGACPKKTQARMPRT
        NRLS RTSG CP KT+ RM RT
Subjt:  NRLSLRTSGACPKKTQARMPRT

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]4.8e-3972.13Show/hide
Query:  IPRTQFSRLGVKSDHRTVSSICFVLAISLSIFGARTPRTSIHTPGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKG
        +PR+QFSR G KSD  TVSS+CFVL I+LSIF ARTPRTS HT GML D FS GIG+EASSL+GEL  +PKRSKRW M PT VERSSG+RNH KCT  +G
Subjt:  IPRTQFSRLGVKSDHRTVSSICFVLAISLSIFGARTPRTSIHTPGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKG

Query:  NRLSLRTSGACPKKTQARMPRT
        N LS RT  A PKKT+ARMPRT
Subjt:  NRLSLRTSGACPKKTQARMPRT

KAA0066117.1 mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa]1.9e-2782.28Show/hide
Query:  PGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKGNRLSLRTSGACPKKTQARMPRT
        PGML DTFSGGIGREASSL+GEL  DPKRSKRWP  PT  ERSSGVRNHWKCTCS+GN LS RTSGA PKKT A MPRT
Subjt:  PGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKGNRLSLRTSGACPKKTQARMPRT

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]2.3e-3352.66Show/hide
Query:  IPRTQFSRLGVKSDHRTVSSICFVLAISLSIFGARTPRTSIHTP------------------------------------------------------GM
        +P+TQFSR G KSD  TVS++C VL  SLSIFGA TPRTS HTP                                                      GM
Subjt:  IPRTQFSRLGVKSDHRTVSSICFVLAISLSIFGARTPRTSIHTP------------------------------------------------------GM

Query:  LSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKGNRLSLRTSGACPKKT
        L DTFSGGIGREASSL+GEL  DPK SKRWPM PTG ERSSG RNHWKCTCS+GN LS RTSGA P+KT
Subjt:  LSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKGNRLSLRTSGACPKKT

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]3.1e-3067.57Show/hide
Query:  KSDHRTVSSICFVLAISLSIFGARTPRTSIHTPGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKGNRLSLRTSGAC
        K+  +TVSS+ F+L ISL IFGA TPRTS HT  ML D FS GIGREASSL+GEL  DPK  KRWPM  T  E SSGVRN+WK TCS+ NRL  RTS  C
Subjt:  KSDHRTVSSICFVLAISLSIFGARTPRTSIHTPGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKGNRLSLRTSGAC

Query:  PKKTQARMPRT
        PKKT ARMP+T
Subjt:  PKKTQARMPRT

TrEMBL top hitse value%identityAlignment
A0A5A7V368 Uncharacterized protein1.9e-3365.57Show/hide
Query:  IPRTQFSRLGVKSDHRTVSSICFVLAISLSIFGARTPRTSIHTPGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKG
        +PRTQFSR   K   +       VL ISLSIF ART RTS HT GML   F+ GIGREASSL+GEL +DPKR KRWPM  T  ER SGVRNHWKCTCS  
Subjt:  IPRTQFSRLGVKSDHRTVSSICFVLAISLSIFGARTPRTSIHTPGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKG

Query:  NRLSLRTSGACPKKTQARMPRT
        NRLS RTSG CP KT+ RM RT
Subjt:  NRLSLRTSGACPKKTQARMPRT

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein2.3e-3972.13Show/hide
Query:  IPRTQFSRLGVKSDHRTVSSICFVLAISLSIFGARTPRTSIHTPGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKG
        +PR+QFSR G KSD  TVSS+CFVL I+LSIF ARTPRTS HT GML D FS GIG+EASSL+GEL  +PKRSKRW M PT VERSSG+RNH KCT  +G
Subjt:  IPRTQFSRLGVKSDHRTVSSICFVLAISLSIFGARTPRTSIHTPGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKG

Query:  NRLSLRTSGACPKKTQARMPRT
        N LS RT  A PKKT+ARMPRT
Subjt:  NRLSLRTSGACPKKTQARMPRT

A0A5A7VGB1 Mitochondrial intermembrane space import and assembly protein 409.2e-2882.28Show/hide
Query:  PGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKGNRLSLRTSGACPKKTQARMPRT
        PGML DTFSGGIGREASSL+GEL  DPKRSKRWP  PT  ERSSGVRNHWKCTCS+GN LS RTSGA PKKT A MPRT
Subjt:  PGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKGNRLSLRTSGACPKKTQARMPRT

A0A5D3DFP2 Uncharacterized protein1.1e-3352.66Show/hide
Query:  IPRTQFSRLGVKSDHRTVSSICFVLAISLSIFGARTPRTSIHTP------------------------------------------------------GM
        +P+TQFSR G KSD  TVS++C VL  SLSIFGA TPRTS HTP                                                      GM
Subjt:  IPRTQFSRLGVKSDHRTVSSICFVLAISLSIFGARTPRTSIHTP------------------------------------------------------GM

Query:  LSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKGNRLSLRTSGACPKKT
        L DTFSGGIGREASSL+GEL  DPK SKRWPM PTG ERSSG RNHWKCTCS+GN LS RTSGA P+KT
Subjt:  LSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKGNRLSLRTSGACPKKT

A0A5D3DIF8 Gag/pol protein1.5e-3067.57Show/hide
Query:  KSDHRTVSSICFVLAISLSIFGARTPRTSIHTPGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKGNRLSLRTSGAC
        K+  +TVSS+ F+L ISL IFGA TPRTS HT  ML D FS GIGREASSL+GEL  DPK  KRWPM  T  E SSGVRN+WK TCS+ NRL  RTS  C
Subjt:  KSDHRTVSSICFVLAISLSIFGARTPRTSIHTPGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKGNRLSLRTSGAC

Query:  PKKTQARMPRT
        PKKT ARMP+T
Subjt:  PKKTQARMPRT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTCCCCGGACTCAGTTTTCTCGTCTTGGGGTAAAAAGCGATCACCGGACGGTTTCTTCCATTTGCTTTGTATTGGCCATAAGTCTTTCGATCTTTGGGGCTCGTACTCC
AAGGACCTCTATCCACACTCCTGGCATGCTCTCTGACACGTTTTCTGGAGGTATAGGTCGGGAAGCAAGCTCGTTGAAGGGAGAACTGGGGTACGACCCAAAACGATCCA
AAAGATGGCCAATGTTTCCAACGGGTGTCGAACGCTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGCAAAGGAAACAGGCTGAGCTTGAGAACTTCCGGTGCT
TGTCCCAAGAAAACGCAAGCGAGAATGCCCCGGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATTCCCCGGACTCAGTTTTCTCGTCTTGGGGTAAAAAGCGATCACCGGACGGTTTCTTCCATTTGCTTTGTATTGGCCATAAGTCTTTCGATCTTTGGGGCTCGTACTCC
AAGGACCTCTATCCACACTCCTGGCATGCTCTCTGACACGTTTTCTGGAGGTATAGGTCGGGAAGCAAGCTCGTTGAAGGGAGAACTGGGGTACGACCCAAAACGATCCA
AAAGATGGCCAATGTTTCCAACGGGTGTCGAACGCTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGCAAAGGAAACAGGCTGAGCTTGAGAACTTCCGGTGCT
TGTCCCAAGAAAACGCAAGCGAGAATGCCCCGGACTTAGTTTTCTCGTCCTAGGGTAAAAAGCGGTCCCCAATGGTTTCTTCCCTTTGCTTCGTATTGTCCATAAGTCTC
CGAGACCCAGTTTTCTCGTACAGGGGTAAAGAGCGATCCCCCGACGATTTCTTCCCTTTGTTTCGTATTCGCCATAAGTCTTTCGATCTTCGGGACTCGACTCCGATGAC
CTCAACTGTAAACCCGATATTTTATTGGTTTAA
Protein sequenceShow/hide protein sequence
IPRTQFSRLGVKSDHRTVSSICFVLAISLSIFGARTPRTSIHTPGMLSDTFSGGIGREASSLKGELGYDPKRSKRWPMFPTGVERSSGVRNHWKCTCSKGNRLSLRTSGA
CPKKTQARMPRT