CuGenDBv2

Gene ID	MELO3C028455
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Genome location	chr10:8568727..8569432
RNA-Seq Expression	MELO3C028455
Synteny	MELO3C028455
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035539.1 retrotransposon protein [Cucumis melo var. makuwa]

1.8e-53

75.17

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Query:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT
        MAEKLP CQVRATTVID RIKTLKRTFQAIA+M GPACSGFGWNDEEKCI+AEK+LFDNWVRSHPA KGLLNK FPYYDELTYV G D            
Subjt:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT

Query:  WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL
         GLTSL   M +LIWGMET++SRPCTAR LT RR MY H DL AL
Subjt:  WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL

KAA0043029.1 retrotransposon protein [Cucumis melo var. makuwa]

6.3e-54

74.83

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Query:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT
        MAEKLPGCQVRATT+IDCRIKTLKRTFQ IAEMRGP CSGFGWNDEEKCI+ EK+LFDNWVR H A KGLLNKPFPYYDELTYVFGRDR    + R + T
Subjt:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT

Query:  W-GLTSLVADMTDLI-WGMETRTSRPCTARELTSRRMMYVHPDLLAL
        +  + S   D  D+   GMETR+ RPCTAR LTSR+ MYVHPDLLAL
Subjt:  W-GLTSLVADMTDLI-WGMETRTSRPCTARELTSRRMMYVHPDLLAL

KAA0048382.1 retrotransposon protein [Cucumis melo var. makuwa]

4.6e-57

78.62

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Query:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT
        MAEKLPGCQVRATTVIDCRIKTLKR FQAIAEMRGPACSGFGWNDEEKCIVAEK+LFDNWVRSHPA KGLLNKP PYYDELTYVFGRDR           
Subjt:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT

Query:  WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL
         G             GMETRTSRPCTARELTSRR MYVH DLLAL
Subjt:  WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL

KAA0054568.1 retrotransposon protein [Cucumis melo var. makuwa]

5.5e-66

86.9

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Query:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT
        MAEKLPGCQVRATTVIDCRIKTLKRTFQAI EMR PACSGF WNDEEKCI+AEK+LF NWVRSHPA KGLLNKPF YYDELTYVFGRDR   G       
Subjt:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT

Query:  WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL
        WGLTSLVADMTDLIWGMETRTSRPCTARELTSRR MYVHPDLLAL
Subjt:  WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL

KAA0056560.1 retrotransposon protein [Cucumis melo var. makuwa]

1.2e-65

85.52

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Query:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT
        MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEK+LFDNWVRSHPA KGLLNKPFPYYDELTYVFGRDR           
Subjt:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT

Query:  WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL
              VADMTDLIWGMETRTSRPCTARELTSRR MYVHPDL AL
Subjt:  WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2E6 Retrotransposon protein

8.9e-54

75.17

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Query:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT
        MAEKLP CQVRATTVID RIKTLKRTFQAIA+M GPACSGFGWNDEEKCI+AEK+LFDNWVRSHPA KGLLNK FPYYDELTYV G D            
Subjt:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT

Query:  WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL
         GLTSL   M +LIWGMET++SRPCTAR LT RR MY H DL AL
Subjt:  WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL

A0A5A7TP77 Retrotransposon protein

3.0e-54

74.83

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Query:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT
        MAEKLPGCQVRATT+IDCRIKTLKRTFQ IAEMRGP CSGFGWNDEEKCI+ EK+LFDNWVR H A KGLLNKPFPYYDELTYVFGRDR    + R + T
Subjt:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT

Query:  W-GLTSLVADMTDLI-WGMETRTSRPCTARELTSRRMMYVHPDLLAL
        +  + S   D  D+   GMETR+ RPCTAR LTSR+ MYVHPDLLAL
Subjt:  W-GLTSLVADMTDLI-WGMETRTSRPCTARELTSRRMMYVHPDLLAL

A0A5A7TXW8 Retrotransposon protein

2.3e-57

78.62

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Query:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT
        MAEKLPGCQVRATTVIDCRIKTLKR FQAIAEMRGPACSGFGWNDEEKCIVAEK+LFDNWVRSHPA KGLLNKP PYYDELTYVFGRDR           
Subjt:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT

Query:  WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL
         G             GMETRTSRPCTARELTSRR MYVH DLLAL
Subjt:  WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL

A0A5A7UHW5 Retrotransposon protein

2.7e-66

86.9

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Query:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT
        MAEKLPGCQVRATTVIDCRIKTLKRTFQAI EMR PACSGF WNDEEKCI+AEK+LF NWVRSHPA KGLLNKPF YYDELTYVFGRDR   G       
Subjt:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT

Query:  WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL
        WGLTSLVADMTDLIWGMETRTSRPCTARELTSRR MYVHPDLLAL
Subjt:  WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL

A0A5A7UNC0 Retrotransposon protein

5.9e-66

85.52

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Query:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT
        MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEK+LFDNWVRSHPA KGLLNKPFPYYDELTYVFGRDR           
Subjt:  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRT

Query:  WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL
              VADMTDLIWGMETRTSRPCTARELTSRR MYVHPDL AL
Subjt:  WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G02210.1 unknown protein

6.1e-07

27.78

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Query:  VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFG
        V+  R K+L+R F AI  +      GF W++E + + A+  ++ +++++H   +  + +P PYY +L  + G
Subjt:  VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFG

AT4G02210.2 unknown protein

6.1e-07

27.78

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Query:  VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFG
        V+  R K+L+R F AI  +      GF W++E + + A+  ++ +++++H   +  + +P PYY +L  + G
Subjt:  VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFG

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTGAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGC
ATGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCGTTGCGGAGAAGAAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGTGAAGGGACTCCTGAACAAAC
CATTCCCGTATTACGACGAACTTACATATGTATTTGGTCGCGATAGGGGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGTCTTGTGGCGGATATG
ACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGATGATGTACGTGCATCCCGACCTTCTCGCGCTTTAG

mRNA sequence

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Protein sequence

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MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKKLFDNWVRSHPAVKGLLNKPFPYYDELTYVFGRDRGPVGSLRHSRTWGLTSLVADM
TDLIWGMETRTSRPCTARELTSRRMMYVHPDLLAL

MELO3C028455 (gene) of Melon (DHL92) v4 genome