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MELO3C028470 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C028470
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRNase H domain-containing protein
Genome locationchr07:17327077..17327819
RNA-Seq ExpressionMELO3C028470
SyntenyMELO3C028470
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033937.1 hypothetical protein E6C27_scaffold43059G001310 [Cucumis melo var. makuwa]1.6e-1375Show/hide
Query:  TMVPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP
        T VPDRSY G+DLT K RSSPDRSWI D SITSPNDD ARSLL G G D KS I+P
Subjt:  TMVPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP
KAA0042866.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-1071.43Show/hide
Query:  TMVPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP
        +++P+R+   VDLTAK RSSPDRSWIAD SIT P DD ARSLL G GSDGKS IVP
Subjt:  TMVPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP
KAA0056218.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-0980.43Show/hide
Query:  MTMVPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLG
        MTMVPDRSYQGVDLT K RSS DRSWI D +ITS NDD ARSLL G
Subjt:  MTMVPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLG
KAA0062017.1 uncharacterized protein E6C27_scaffold89G003480 [Cucumis melo var. makuwa]6.8e-1285.11Show/hide
Query:  GVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP
        GVDLT K RSSPDRSWIADGSITSPNDD ARSLL GGG D KS IVP
Subjt:  GVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP
TYK14647.1 hypothetical protein E5676_scaffold663G00230 [Cucumis melo var. makuwa]6.6e-1581.48Show/hide
Query:  VPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP
        VPDRSYQGVDLTAK RSSPDRSWIAD +IT P D+  RSLL GGGSDGKS IVP
Subjt:  VPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP
TrEMBL top hitse value%identityAlignment
A0A5A7SXD7 Uncharacterized protein7.8e-1475Show/hide
Query:  TMVPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP
        T VPDRSY G+DLT K RSSPDRSWI D SITSPNDD ARSLL G G D KS I+P
Subjt:  TMVPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP
A0A5A7TLK0 Retrotransposon gag protein6.2e-1171.43Show/hide
Query:  TMVPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP
        +++P+R+   VDLTAK RSSPDRSWIAD SIT P DD ARSLL G GSDGKS IVP
Subjt:  TMVPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP
A0A5A7UM99 Ty3-gypsy retrotransposon protein5.3e-1080.43Show/hide
Query:  MTMVPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLG
        MTMVPDRSYQGVDLT K RSS DRSWI D +ITS NDD ARSLL G
Subjt:  MTMVPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLG
A0A5A7V4Z7 RNase H domain-containing protein3.3e-1285.11Show/hide
Query:  GVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP
        GVDLT K RSSPDRSWIADGSITSPNDD ARSLL GGG D KS IVP
Subjt:  GVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP
A0A5D3CRV2 Uncharacterized protein3.2e-1581.48Show/hide
Query:  VPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP
        VPDRSYQGVDLTAK RSSPDRSWIAD +IT P D+  RSLL GGGSDGKS IVP
Subjt:  VPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGATGGTGCCCGATCGCTCCTACCAGGGGGTGGATCTGACGGCAAAAGTCCGATCGTCCCCCGATAGAAGTTGGATCGCTGACGGCAGTATCACCTCTCCAAATGA
CGATAGTGCCCGATCACTCCTATTAGGGGGTGGATCTGACGGCAAAAGCCTGATCGTCCCCTGA
mRNA sequenceShow/hide mRNA sequence
AGAAGTTGGATCGCTGATGGTAGTATCACCTCTCCAAATGATGCTGGTGCCCGATCGCTCCTACCAGGTGGTAGATCTGACGACAAAAGCCCGATCGTCCCCCGATAAAA
GTTGGATCGTTGACGACAATATCACCCCTCCAAAGGACGAAGGTGTCTGATCGCTTCTACCAGAAGGTGGATCTGACGGCAAAAGTCTGATCGTCCCCCGATAGAAGTTA
GATCGCTGACGGCAATACCACCTCTCCAAACGACGAAGGTGTCCGATCGCTCCTACCAGGGGGTGGATCTGACGGCAAAAGCCTGATCGTCCTCCGATAGAAGTTGGATC
GCTGACGGCAGTATCACGTCTCCAAATGACGATGGTGCCCGATCGCTCCTACCAGGGGGTGGATCTGACGGCAAAAGTCCGATCGTCCCCCGATAGAAGTTGGATCGCTG
ACGGCAGTATCACCTCTCCAAATGACGATAGTGCCCGATCACTCCTATTAGGGGGTGGATCTGACGGCAAAAGCCTGATCGTCCCCTGATAG
Protein sequenceShow/hide protein sequence
MTMVPDRSYQGVDLTAKVRSSPDRSWIADGSITSPNDDSARSLLLGGGSDGKSLIVP