; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C028481 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C028481
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr09:14650679..14651128
RNA-Seq ExpressionMELO3C028481
SyntenyMELO3C028481
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054568.1 retrotransposon protein [Cucumis melo var. makuwa]5.1e-4196.67Show/hide
Query:  WGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHA
        WGLTS VADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGP+QVDRR RGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHA
Subjt:  WGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHA
KAA0056563.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-3983.81Show/hide
Query:  GRPVGSLRHSRTW---GLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLR
        GR   + R + T+   G    VADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRG+VSETSSLKRYIWRSTKQTSNSGRLR
Subjt:  GRPVGSLRHSRTW---GLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLR

Query:  SGQHA
        SGQHA
Subjt:  SGQHA
KAA0062452.1 hypothetical protein E6C27_scaffold130G00330 [Cucumis melo var. makuwa]4.6e-5094.44Show/hide
Query:  MYLVAIGRPVGSLRHSRTWGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSG
        MY VAIGRPVG LRHS TWGLTS VADMTDLIWGMETRTSRPCT RELTSRRTMYVHPDLLALQRVGPDQVDRRGRG+VSETSSLKRYIWRSTKQTSNSG
Subjt:  MYLVAIGRPVGSLRHSRTWGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSG

Query:  RLRSGQHA
        RLRSGQHA
Subjt:  RLRSGQHA
TYK08719.1 hypothetical protein E5676_scaffold76G00220 [Cucumis melo var. makuwa]9.3e-3595.06Show/hide
Query:  MTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHA
        MTDLIWGMETRTS PCTARELTSRRTMYVHPDLLALQRVG DQVDRRGRG+VSETSSLKRYIW STKQTSNSGRLRSGQHA
Subjt:  MTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHA
TYK27431.1 hypothetical protein E5676_scaffold325G001260 [Cucumis melo var. makuwa]4.6e-5094.44Show/hide
Query:  MYLVAIGRPVGSLRHSRTWGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSG
        MY VAIGRPVG LRHS TWGLTS VADMTDLIWGMETRTSRPCT RELTSRRTMYVHPDLLALQRVGPDQVDRRGRG+VSETSSLKRYIWRSTKQTSNSG
Subjt:  MYLVAIGRPVGSLRHSRTWGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSG

Query:  RLRSGQHA
        RLRSGQHA
Subjt:  RLRSGQHA
TrEMBL top hitse value%identityAlignment
A0A5A7UHW5 Retrotransposon protein2.5e-4196.67Show/hide
Query:  WGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHA
        WGLTS VADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGP+QVDRR RGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHA
Subjt:  WGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHA
A0A5A7UL03 Retrotransposon protein7.9e-4083.81Show/hide
Query:  GRPVGSLRHSRTW---GLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLR
        GR   + R + T+   G    VADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRG+VSETSSLKRYIWRSTKQTSNSGRLR
Subjt:  GRPVGSLRHSRTW---GLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLR

Query:  SGQHA
        SGQHA
Subjt:  SGQHA
A0A5A7V2L2 Uncharacterized protein2.2e-5094.44Show/hide
Query:  MYLVAIGRPVGSLRHSRTWGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSG
        MY VAIGRPVG LRHS TWGLTS VADMTDLIWGMETRTSRPCT RELTSRRTMYVHPDLLALQRVGPDQVDRRGRG+VSETSSLKRYIWRSTKQTSNSG
Subjt:  MYLVAIGRPVGSLRHSRTWGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSG

Query:  RLRSGQHA
        RLRSGQHA
Subjt:  RLRSGQHA
A0A5D3CED6 Uncharacterized protein4.5e-3595.06Show/hide
Query:  MTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHA
        MTDLIWGMETRTS PCTARELTSRRTMYVHPDLLALQRVG DQVDRRGRG+VSETSSLKRYIW STKQTSNSGRLRSGQHA
Subjt:  MTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHA
A0A5D3DUQ6 Uncharacterized protein2.2e-5094.44Show/hide
Query:  MYLVAIGRPVGSLRHSRTWGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSG
        MY VAIGRPVG LRHS TWGLTS VADMTDLIWGMETRTSRPCT RELTSRRTMYVHPDLLALQRVGPDQVDRRGRG+VSETSSLKRYIWRSTKQTSNSG
Subjt:  MYLVAIGRPVGSLRHSRTWGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSG

Query:  RLRSGQHA
        RLRSGQHA
Subjt:  RLRSGQHA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTTGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCAGGTGGCGGATATGACAGATTTGATATGGGGGATG
GAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAA
GTGGATCGAAGAGGAAGAGGGAAAGTCAGCGAGACTTCGAGTTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGC
CAGCACGCAAACACATTTTATCATAAAATTCCCATTAAACTACCCACCTAA
mRNA sequenceShow/hide mRNA sequence
TTTTTTTTTCTGCCCGCAGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAACCATTCCCGTATTACGACGAGCTTACATATGTATTTGGTCGCGATAGGGCGAC
CGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCAGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTA
CAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGAAAG
TCAGCGAGACTTCGAGTTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCAGCACGCAAACACATTTTATCATA
AAATTCCCATTAAACTACCCACCTAACCCT
Protein sequenceShow/hide protein sequence
MYLVAIGRPVGSLRHSRTWGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLRSG
QHANTFYHKIPIKLPT