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MELO3C028596 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C028596
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionExopolygalacturonase-like
Genome locationchr01:3636973..3637145
RNA-Seq ExpressionMELO3C028596
SyntenyMELO3C028596
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059139.1 exopolygalacturonase-like [Cucumis melo var. makuwa]1.2e-1984.21Show/hide
Query:  VLSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLIRV
        VL+NAWKDACASTNPSQLLIP G+YQLNQS+L GPC STIEVRMEGTLQAHPD I +
Subjt:  VLSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLIRV
KAA0059157.1 exopolygalacturonase-like [Cucumis melo var. makuwa]4.7e-2189.47Show/hide
Query:  VLSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLIRV
        VL+NAWKDACASTNPSQLLIPIG+YQLNQSILHGPCKSTIEVRME TLQAHP+ I V
Subjt:  VLSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLIRV
KAA0059162.1 exopolygalacturonase-like [Cucumis melo var. makuwa]3.4e-1985.19Show/hide
Query:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLI
        L+NAWKDAC STNPS+LLIP G+YQLNQSILHGPC STIEV+MEGTLQAHPD I
Subjt:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLI
TYK02527.1 exopolygalacturonase-like [Cucumis melo var. makuwa]3.4e-1985.19Show/hide
Query:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLI
        L+NAWKDAC STNPS+LLIP G+YQLNQSILHGPC STIEV+MEGTLQAHPD I
Subjt:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLI
XP_008455507.2 PREDICTED: exopolygalacturonase-like [Cucumis melo]1.2e-1984.21Show/hide
Query:  VLSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLIRV
        VL+NAWKDACASTNPSQLLIP G+YQLNQS+L GPC STIEVRMEGTLQAHPD I +
Subjt:  VLSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLIRV
TrEMBL top hitse value%identityAlignment
A0A1S3C129 exopolygalacturonase-like5.6e-2084.21Show/hide
Query:  VLSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLIRV
        VL+NAWKDACASTNPSQLLIP G+YQLNQS+L GPC STIEVRMEGTLQAHPD I +
Subjt:  VLSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLIRV
A0A5A7UTD3 Exopolygalacturonase-like1.6e-1985.19Show/hide
Query:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLI
        L+NAWKDAC STNPS+LLIP G+YQLNQSILHGPC STIEV+MEGTLQAHPD I
Subjt:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLI
A0A5A7UX05 Exopolygalacturonase-like2.3e-2189.47Show/hide
Query:  VLSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLIRV
        VL+NAWKDACASTNPSQLLIPIG+YQLNQSILHGPCKSTIEVRME TLQAHP+ I V
Subjt:  VLSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLIRV
A0A5D3BSV2 Exopolygalacturonase-like1.6e-1985.19Show/hide
Query:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLI
        L+NAWKDAC STNPS+LLIP G+YQLNQSILHGPC STIEV+MEGTLQAHPD I
Subjt:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLI
A0A5D3DDK3 Exopolygalacturonase-like5.6e-2084.21Show/hide
Query:  VLSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLIRV
        VL+NAWKDACASTNPSQLLIP G+YQLNQS+L GPC STIEVRMEGTLQAHPD I +
Subjt:  VLSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLIRV
SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)5.6e-0948.08Show/hide
Query:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPD
        L+ AWK+ACAS +PS +L+P G + +    L GPCKS+I ++++GTL+A  D
Subjt:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPD
Q05967 Polygalacturonase4.3e-0950Show/hide
Query:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPD
        L NA+K+AC ST+PS ++IP G + +NQ  L GPCKS +E++++ TL+A  D
Subjt:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPD
Q39766 Polygalacturonase8.6e-1052Show/hide
Query:  NAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPD
        +AWK+ACAS  PS ++IP G Y L++  L GPCK+ IE+ ++GT+QA  D
Subjt:  NAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPD
Q39786 Polygalacturonase8.6e-1052Show/hide
Query:  NAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPD
        +AWK+ACAS  PS ++IP G Y L++  L GPCK+ IE+ ++GT+QA  D
Subjt:  NAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPD
Q40312 Polygalacturonase2.3e-1051.92Show/hide
Query:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPD
        L++AW +ACAST  ++++IP G YQLN   L GPCK+ IE++++GT+QA  D
Subjt:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPD
Arabidopsis top hitse value%identityAlignment
AT1G17150.1 Pectin lyase-like superfamily protein1.8e-0743.14Show/hide
Query:  SNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPD
        +NAWKDAC    PS++ IP+G + L      GPC   I   ++GTL A P+
Subjt:  SNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPD
AT1G78400.1 Pectin lyase-like superfamily protein1.7e-0541.18Show/hide
Query:  SNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPD
        + AWKDAC      ++ IP G + L      GPCKS I   ++GTL A  D
Subjt:  SNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPD
AT2G41850.1 polygalacturonase abscission zone A. thaliana7.8e-0650Show/hide
Query:  NAWKDACASTNPSQLLIPIGIYQLNQSI-LHGPCKSTIEVRMEGTLQA
        NAWK AC+S     LL+P G   L +SI L GPC S + V++ GTL A
Subjt:  NAWKDACASTNPSQLLIPIGIYQLNQSI-LHGPCKSTIEVRMEGTLQA
AT3G07820.1 Pectin lyase-like superfamily protein1.1e-0740Show/hide
Query:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLIR
        L  A+  AC S++PS+++IP G ++L +  + GPCK+ IEV ++GT++A  + I+
Subjt:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLIR
AT3G07830.1 Pectin lyase-like superfamily protein7.8e-0638.78Show/hide
Query:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQA
        L  A+  AC S  P +++IP G ++L + ++ GPCKS +E+ + GT+ A
Subjt:  LSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTTTGTCAAATGCATGGAAGGATGCATGTGCATCCACCAATCCTAGTCAATTGTTGATTCCAATAGGAATTTACCAACTAAACCAATCCATTCTCCATGGTCCTTGCAA
GAGTACTATCGAGGTCCGAATGGAAGGAACATTACAAGCTCATCCCGATCTAATAAGAGTT
mRNA sequenceShow/hide mRNA sequence
GTTTTGTCAAATGCATGGAAGGATGCATGTGCATCCACCAATCCTAGTCAATTGTTGATTCCAATAGGAATTTACCAACTAAACCAATCCATTCTCCATGGTCCTTGCAA
GAGTACTATCGAGGTCCGAATGGAAGGAACATTACAAGCTCATCCCGATCTAATAAGAGTTAG
Protein sequenceShow/hide protein sequence
VLSNAWKDACASTNPSQLLIPIGIYQLNQSILHGPCKSTIEVRMEGTLQAHPDLIRV