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MELO3C028639 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C028639
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr01:7835179..7845306
RNA-Seq ExpressionMELO3C028639
SyntenyMELO3C028639
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]4.3e-3278.49Show/hide
Query:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEI-MPM
        MI IQ SYPKWYDSNARCDYH  G GH TENCLALKRKVQ LIN   LSFKK+GEK NVNEN LP+HENPKVNVVD LV+K KN++HEI MPM
Subjt:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEI-MPM

KAA0040717.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]6.6e-3377.78Show/hide
Query:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEIM
        MI IQ SYPKWYDSNARCDYH RGA H +ENCLALKRKVQ L+N   LSFKK+ EKPNVNEN LPNHENPKVNVVD+LV+K+KN+++EIM
Subjt:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEIM

KAA0056622.1 uncharacterized protein E6C27_scaffold288G001420 [Cucumis melo var. makuwa]9.6e-3277.42Show/hide
Query:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEI-MPM
        MI IQ  YPKWYDSNARCDYH  G GH TENCLALKR VQ LINT  LSFKK GEKPNVNEN LP+HENPKVN VD LV+K KN++HEI MPM
Subjt:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEI-MPM

KAA0066746.1 uncharacterized protein E6C27_scaffold271G00850 [Cucumis melo var. makuwa]1.5e-3278.49Show/hide
Query:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEI-MPM
        MI IQ  YPKWYDSNARCDYH  G GH TENCLALKRKVQ LIN   LSFKK+GEKPNVNEN LPNHENPKV VVD LV+K KN++HEI MPM
Subjt:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEI-MPM

TYK07552.1 girdin-like [Cucumis melo var. makuwa]5.6e-3277.42Show/hide
Query:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEI-MPM
        MI IQ SYPKWYDSNARCDYH  G  H TENCLALKRKVQ LIN   LSFKK+GEKPNVNEN LP+HENPKVN VD LV+K KN++HEI MPM
Subjt:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEI-MPM

TrEMBL top hitse value%identityAlignment
A0A5A7T7R4 Ribonuclease H2.1e-3278.49Show/hide
Query:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEI-MPM
        MI IQ SYPKWYDSNARCDYH  G GH TENCLALKRKVQ LIN   LSFKK+GEK NVNEN LP+HENPKVNVVD LV+K KN++HEI MPM
Subjt:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEI-MPM

A0A5A7V3W7 Retrotrans_gag domain-containing protein4.6e-3276.34Show/hide
Query:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEI-MPM
        MI IQ  YPKWYDSNARCDYH  G GH TENC ALKR VQ LIN   LSFKK+GEKPNVNEN LPNHENPKVN VD LV+K KN++HEI MPM
Subjt:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEI-MPM

A0A5A7VK41 Reverse transcriptase domain-containing protein7.1e-3378.49Show/hide
Query:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEI-MPM
        MI IQ  YPKWYDSNARCDYH  G GH TENCLALKRKVQ LIN   LSFKK+GEKPNVNEN LPNHENPKV VVD LV+K KN++HEI MPM
Subjt:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEI-MPM

A0A5D3C8D9 Girdin-like2.7e-3277.42Show/hide
Query:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEI-MPM
        MI IQ SYPKWYDSNARCDYH  G  H TENCLALKRKVQ LIN   LSFKK+GEKPNVNEN LP+HENPKVN VD LV+K KN++HEI MPM
Subjt:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEI-MPM

A0A5D3CYV0 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein3.2e-3377.78Show/hide
Query:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEIM
        MI IQ SYPKWYDSNARCDYH RGA H +ENCLALKRKVQ L+N   LSFKK+ EKPNVNEN LPNHENPKVNVVD+LV+K+KN+++EIM
Subjt:  MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEIM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCTTATACAACATTCTTATCCCAAATGGTATGATTCAAATGCTCGATGTGATTATCATACTAGAGGAGCAGGACACTTAACTGAAAATTGTTTAGCTTTG
AAGAGGAAGGTGCAATTTCTAATTAATACTAGATTGTTAAGCTTCAAAAAAGCTGGTGAGAAGCCGAATGTCAATGAAAATGCACTGCCTAATCATGAAAATCCA
AAAGTGAACGTTGTGGATGACCTTGTTAAAAAGTGGAAAAATAAAATTCATGAGATAATGCCTATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTCTTATACAACATTCTTATCCCAAATGGTATGATTCAAATGCTCGATGTGATTATCATACTAGAGGAGCAGGACACTTAACTGAAAATTGTTTAGCTTTG
AAGAGGAAGGTGCAATTTCTAATTAATACTAGATTGTTAAGCTTCAAAAAAGCTGGTGAGAAGCCGAATGTCAATGAAAATGCACTGCCTAATCATGAAAATCCA
AAAGTGAACGTTGTGGATGACCTTGTTAAAAAGTGGAAAAATAAAATTCATGAGATAATGCCTATGTAAGCACTTTTTGAAGGTCTTTTTGAAGCAGGATATGTT
AGTCATTAATATTTAGATCCCTAACATAAGATATGAAATGTACAATGAAAGTAGACATTGTATATTCCATCAAGGATTTGTAGGTCACATTGTCCAACAATGCCA
CAAATTTAGATCCAAAGTACAACAACTTAT
Protein sequenceShow/hide protein sequence
MILIQHSYPKWYDSNARCDYHTRGAGHLTENCLALKRKVQFLINTRLLSFKKAGEKPNVNENALPNHENPKVNVVDDLVKKWKNKIHEIMPM