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MELO3C028651 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C028651
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionGag/pol protein
Genome locationchr01:8594275..8595727
RNA-Seq ExpressionMELO3C028651
SyntenyMELO3C028651
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33914.1 hypothetical protein [Cucumis melo subsp. melo]5.1e-3554.31Show/hide
Query:  MPPPLSTATHRTAELQPSGADLSRVSKPFTWSLAASSAPIRRLHRSVVRPSIFVSCRYEFIRSPSHAVAHRVPSIEVCEARVAQRSLSHAVAYQASPRRP
        +PP       + AELQPS AD+S V K FTWS AASSAPIR                    R P H                        +  +  PRRP
Subjt:  MPPPLSTATHRTAELQPSGADLSRVSKPFTWSLAASSAPIRRLHRSVVRPSIFVSCRYEFIRSPSHAVAHRVPSIEVCEARVAQRSLSHAVAYQASPRRP

Query:  VARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAACRAFLHVRA
        VARS T  HIE R SK AKPS A  S T VAH HPTRT APSPSTRNSTR PAFSS READ +RALLR+ IASR SAY VAESHVRAACRA LHVRA
Subjt:  VARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAACRAFLHVRA

KAA0066167.1 pol protein [Cucumis melo var. makuwa]7.6e-2362.39Show/hide
Query:  HAVAYQASPRRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAA
        H ++++   RRP ARSAT SHIE RPSKSAKPS A    T V H H TRT  PSPST NSTR PAFSS RE DP RALL + I SRASAY VAESHVRAA
Subjt:  HAVAYQASPRRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAA

Query:  CR--------AFLHVRA
         R         FL +RA
Subjt:  CR--------AFLHVRA

KAA0066985.1 gag/pol protein [Cucumis melo var. makuwa]3.1e-2452.94Show/hide
Query:  SPSHAVAHRVPSIEVCEARVAQRSLSHAVAYQASPRRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEH-PTRTTAPSPSTRNSTRVPAFSSLREAD
        SPSHAVAHR PSIEVCEAR+AQ            PRR    S+T     R P+  A P             H  T+   P P  R   R PAFSS READ
Subjt:  SPSHAVAHRVPSIEVCEARVAQRSLSHAVAYQASPRRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEH-PTRTTAPSPSTRNSTRVPAFSSLREAD

Query:  PSRALLRDSIASRASAYIVAESHVRAACRAFLHVRAAC---------LSLELCCWESVTLRLGLIEQISR
        P+RALLR+ IAS ASAYIVAESH RA C+  LH RAAC          +L L CWESVTLRLGL+EQISR
Subjt:  PSRALLRDSIASRASAYIVAESHVRAACRAFLHVRAAC---------LSLELCCWESVTLRLGLIEQISR

TYK15208.1 pol protein [Cucumis melo var. makuwa]7.6e-2362.39Show/hide
Query:  HAVAYQASPRRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAA
        H ++++   RRP ARSAT SHIE RPSKSAKPS A    T V H H TRT  PSPST NSTR PAFSS RE DP RALL + I SRASAY VAESHVRAA
Subjt:  HAVAYQASPRRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAA

Query:  CR--------AFLHVRA
         R         FL +RA
Subjt:  CR--------AFLHVRA

TYK17663.1 hypothetical protein E5676_scaffold434G005350 [Cucumis melo var. makuwa]1.1e-3454.45Show/hide
Query:  AAAMPPPLSTATHRTAELQPSGADLSRVSKPFTWSLAASSAPIRRLHRSVVRPSIFVSCRYEFIRSPSHAVAHRVPSIEVCEARVAQRSLSHAVAYQASP
        A A PPP STA+  TAELQPS  DL+ +SKPFTWS A S A IR              C  E  R                            +  Q  P
Subjt:  AAAMPPPLSTATHRTAELQPSGADLSRVSKPFTWSLAASSAPIRRLHRSVVRPSIFVSCRYEFIRSPSHAVAHRVPSIEVCEARVAQRSLSHAVAYQASP

Query:  RRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAA
        RRP ARSAT SHIE RPSKSAKP+ A TS T VAH HPTR  APSPSTRNST  PAFSS REA+P+ ALLR+ IASRASAY VAESH RAA
Subjt:  RRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAA

TrEMBL top hitse value%identityAlignment
A0A5A7VGG3 Pol protein3.7e-2362.39Show/hide
Query:  HAVAYQASPRRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAA
        H ++++   RRP ARSAT SHIE RPSKSAKPS A    T V H H TRT  PSPST NSTR PAFSS RE DP RALL + I SRASAY VAESHVRAA
Subjt:  HAVAYQASPRRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAA

Query:  CR--------AFLHVRA
         R         FL +RA
Subjt:  CR--------AFLHVRA

A0A5A7VMH4 Gag/pol protein1.5e-2452.94Show/hide
Query:  SPSHAVAHRVPSIEVCEARVAQRSLSHAVAYQASPRRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEH-PTRTTAPSPSTRNSTRVPAFSSLREAD
        SPSHAVAHR PSIEVCEAR+AQ            PRR    S+T     R P+  A P             H  T+   P P  R   R PAFSS READ
Subjt:  SPSHAVAHRVPSIEVCEARVAQRSLSHAVAYQASPRRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEH-PTRTTAPSPSTRNSTRVPAFSSLREAD

Query:  PSRALLRDSIASRASAYIVAESHVRAACRAFLHVRAAC---------LSLELCCWESVTLRLGLIEQISR
        P+RALLR+ IAS ASAYIVAESH RA C+  LH RAAC          +L L CWESVTLRLGL+EQISR
Subjt:  PSRALLRDSIASRASAYIVAESHVRAACRAFLHVRAAC---------LSLELCCWESVTLRLGLIEQISR

A0A5D3CVE6 Pol protein3.7e-2362.39Show/hide
Query:  HAVAYQASPRRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAA
        H ++++   RRP ARSAT SHIE RPSKSAKPS A    T V H H TRT  PSPST NSTR PAFSS RE DP RALL + I SRASAY VAESHVRAA
Subjt:  HAVAYQASPRRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAA

Query:  CR--------AFLHVRA
         R         FL +RA
Subjt:  CR--------AFLHVRA

A0A5D3D0F0 Uncharacterized protein5.5e-3554.45Show/hide
Query:  AAAMPPPLSTATHRTAELQPSGADLSRVSKPFTWSLAASSAPIRRLHRSVVRPSIFVSCRYEFIRSPSHAVAHRVPSIEVCEARVAQRSLSHAVAYQASP
        A A PPP STA+  TAELQPS  DL+ +SKPFTWS A S A IR              C  E  R                            +  Q  P
Subjt:  AAAMPPPLSTATHRTAELQPSGADLSRVSKPFTWSLAASSAPIRRLHRSVVRPSIFVSCRYEFIRSPSHAVAHRVPSIEVCEARVAQRSLSHAVAYQASP

Query:  RRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAA
        RRP ARSAT SHIE RPSKSAKP+ A TS T VAH HPTR  APSPSTRNST  PAFSS REA+P+ ALLR+ IASRASAY VAESH RAA
Subjt:  RRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAA

E5GBS2 Uncharacterized protein2.5e-3554.31Show/hide
Query:  MPPPLSTATHRTAELQPSGADLSRVSKPFTWSLAASSAPIRRLHRSVVRPSIFVSCRYEFIRSPSHAVAHRVPSIEVCEARVAQRSLSHAVAYQASPRRP
        +PP       + AELQPS AD+S V K FTWS AASSAPIR                    R P H                        +  +  PRRP
Subjt:  MPPPLSTATHRTAELQPSGADLSRVSKPFTWSLAASSAPIRRLHRSVVRPSIFVSCRYEFIRSPSHAVAHRVPSIEVCEARVAQRSLSHAVAYQASPRRP

Query:  VARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAACRAFLHVRA
        VARS T  HIE R SK AKPS A  S T VAH HPTRT APSPSTRNSTR PAFSS READ +RALLR+ IASR SAY VAESHVRAACRA LHVRA
Subjt:  VARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAACRAFLHVRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCTTGGGAAGTGGATCATCTTCTTCACAAAGAGAAAAAACAAAGGGAAGGAGGAGCACCAAACCCTAACCCTAGCCGCCGCCATGCCGCCACCACTGTCGACCGC
AACCCACCGCACTGCCGAGCTCCAGCCGTCAGGTGCGGATCTCAGCCGCGTCTCCAAGCCGTTCACGTGGAGCCTCGCCGCATCGTCTGCACCGATCCGTCGTCTGCACC
GATCCGTCGTCCGCCCGAGCATTTTTGTCAGCTGTCGTTACGAGTTCATCCGCTCGCCCAGCCACGCCGTCGCACATCGAGTGCCGTCCATCGAAGTCTGTGAAGCCCGC
GTTGCCCAGCGCTCACTTAGCCACGCCGTTGCATATCAAGCGTCCCCGCGTCGCCCAGTCGCTCGCTCAGCCACGTCGTCGCACATCGAACGCCGTCCATCGAAGTCTGC
GAAGCCCAGCCACGCCTGCACCTCCGTAACCCTAGTCGCACACGAGCACCCGACCCGAACAACCGCGCCCTCGCCTTCGACCCGAAACTCGACTCGCGTACCCGCATTTT
CTTCACTGCGTGAAGCCGATCCGAGCCGCGCCCTTCTCCGTGATTCGATCGCGAGTCGTGCCAGTGCCTACATAGTAGCCGAGTCGCACGTGCGAGCTGCCTGCCGAGCC
TTCCTGCACGTGCGAGCCGCCTGTCTGAGCCTAGAACTTTGCTGCTGGGAAAGCGTGACCTTGCGGTTAGGACTCATTGAGCAAATATCCAGGTAA
mRNA sequenceShow/hide mRNA sequence
TTAAGCCTTTTTTGCCACCCTTTCAAATTTTGTTTCTGATATTGGTGAGAAGGTTCCTTCTTCTCGCACACCTTTTCTTGCTCCTCCTCACGGTCTTCTTTGTAACGCCC
CAAATTTTTGGATGTATCTTGGGAAGTGGATCATCTTCTTCACAAAGAGAAAAAACAAAGGGAAGGAGGAGCACCAAACCCTAACCCTAGCCGCCGCCATGCCGCCACCA
CTGTCGACCGCAACCCACCGCACTGCCGAGCTCCAGCCGTCAGGTGCGGATCTCAGCCGCGTCTCCAAGCCGTTCACGTGGAGCCTCGCCGCATCGTCTGCACCGATCCG
TCGTCTGCACCGATCCGTCGTCCGCCCGAGCATTTTTGTCAGCTGTCGTTACGAGTTCATCCGCTCGCCCAGCCACGCCGTCGCACATCGAGTGCCGTCCATCGAAGTCT
GTGAAGCCCGCGTTGCCCAGCGCTCACTTAGCCACGCCGTTGCATATCAAGCGTCCCCGCGTCGCCCAGTCGCTCGCTCAGCCACGTCGTCGCACATCGAACGCCGTCCA
TCGAAGTCTGCGAAGCCCAGCCACGCCTGCACCTCCGTAACCCTAGTCGCACACGAGCACCCGACCCGAACAACCGCGCCCTCGCCTTCGACCCGAAACTCGACTCGCGT
ACCCGCATTTTCTTCACTGCGTGAAGCCGATCCGAGCCGCGCCCTTCTCCGTGATTCGATCGCGAGTCGTGCCAGTGCCTACATAGTAGCCGAGTCGCACGTGCGAGCTG
CCTGCCGAGCCTTCCTGCACGTGCGAGCCGCCTGTCTGAGCCTAGAACTTTGCTGCTGGGAAAGCGTGACCTTGCGGTTAGGACTCATTGAGCAAATATCCAGGTAAGAG
ATTCTACT
Protein sequenceShow/hide protein sequence
MYLGKWIIFFTKRKNKGKEEHQTLTLAAAMPPPLSTATHRTAELQPSGADLSRVSKPFTWSLAASSAPIRRLHRSVVRPSIFVSCRYEFIRSPSHAVAHRVPSIEVCEAR
VAQRSLSHAVAYQASPRRPVARSATSSHIERRPSKSAKPSHACTSVTLVAHEHPTRTTAPSPSTRNSTRVPAFSSLREADPSRALLRDSIASRASAYIVAESHVRAACRA
FLHVRAACLSLELCCWESVTLRLGLIEQISR