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MELO3C028665 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C028665
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr12:11283389..11285755
RNA-Seq ExpressionMELO3C028665
SyntenyMELO3C028665
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036771.1 retrotransposon protein [Cucumis melo var. makuwa]8.1e-6368.04Show/hide
Query:  MCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELS----------GRAESFANIGLNDPAGYEPFAVDATPDTDFQPMYSQGLNM
        M GPTCS FGWNDEQKCIVAEKEVFDNWVKSH  AKGLLNK FP+YDELS          G+AESFA++G NDPAGYEPFA +ATPD DFQPMYSQGLNM
Subjt:  MCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELS----------GRAESFANIGLNDPAGYEPFAVDATPDTDFQPMYSQGLNM

Query:  SPDELMGIRNA---------------------------------QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKNR
        SPDELM   NA                                 QLEAI ELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPY NIILQ+NR
Subjt:  SPDELMGIRNA---------------------------------QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKNR

KAA0037854.1 retrotransposon protein [Cucumis melo var. makuwa]8.1e-6364.68Show/hide
Query:  MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDEL----------SGRAESFANIGLNDPAGYEPFAVDATPDTDFQPM
        MFHA+AEM GPTC  FGWNDEQKCIVAEKEVFD+WVKSHP AKGLLNK FPHYDEL           GR E+F N+G ND AGYE F  DAT DTDFQ M
Subjt:  MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDEL----------SGRAESFANIGLNDPAGYEPFAVDATPDTDFQPM

Query:  YSQGLNMSPDELMGIRN---------------------------------AQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKN
        YSQGLNMS DELM  R                                   QLEAIPELTLMDRC LMRILMRNVD+MKAFL+VPDNMKYPYCNIILQ+N
Subjt:  YSQGLNMSPDELMGIRN---------------------------------AQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKN

Query:  R
        R
Subjt:  R

KAA0054347.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-6366.17Show/hide
Query:  MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELS----------GRAESFANIGLNDPAGYEPFAVDATPDTDFQPM
        MFHAIAEM GPTCS FGWNDEQKCIVAEKEVFDNWVKSH  AKGLL K F HYDELS          G AESFA++G N+ AGYEPF  +ATPDT+FQPM
Subjt:  MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELS----------GRAESFANIGLNDPAGYEPFAVDATPDTDFQPM

Query:  YSQGLNMSPDELMGIRNA---------------------------------QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKN
        YSQ LNMSPDELMG RNA                                 QLEAIPELT MDRC LM ILMRNV+DMKAFLEVPDNMKYPYC+IILQ+N
Subjt:  YSQGLNMSPDELMGIRNA---------------------------------QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKN

Query:  R
        R
Subjt:  R

TYK05687.1 retrotransposon protein [Cucumis melo var. makuwa]3.9e-6571.04Show/hide
Query:  MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELS----------GRAESFANIGLNDPAGYEPFAVDATPDTDFQPM
        MFHAIAEM GPTCS FGWNDEQKCIV EKEVFD+WVKSHPTAKGLLNKSFPHYDELS          GR +SF ++G ND   YE F  DA  DT+FQPM
Subjt:  MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELS----------GRAESFANIGLNDPAGYEPFAVDATPDTDFQPM

Query:  YSQGLNMSPDELMGIRNA---------------QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKNR
        YSQGL+MS DELMG R A               QLE IPELTLMDRC LMRILMRNVDDMKAFLEVPDNMKYPYC+ ILQ+NR
Subjt:  YSQGLNMSPDELMGIRNA---------------QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKNR

TYK19659.1 retrotransposon protein [Cucumis melo var. makuwa]4.7e-6369.61Show/hide
Query:  MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELS----------GRAESFANIGLNDPAGYEPFAVDATPDTDFQPM
        MFHA+ +M GP CS FG NDE+KCIVAEKEVFD+WVKSHP  KGLLNKSF HYD+LS          GRAESFA++G ND  GY+ FA DA PDTDF PM
Subjt:  MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELS----------GRAESFANIGLNDPAGYEPFAVDATPDTDFQPM

Query:  YSQGLNMSPDELMGIRNA--------------QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKN
        YSQGLNM  D+LMGIR A              QLEAIPELTLMDRCRLMRILMRNVDDMKAFL VPDNMKYPYC+II Q+N
Subjt:  YSQGLNMSPDELMGIRNA--------------QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKN

TrEMBL top hitse value%identityAlignment
A0A5A7T5D2 Retrotransposon protein3.9e-6368.04Show/hide
Query:  MCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELS----------GRAESFANIGLNDPAGYEPFAVDATPDTDFQPMYSQGLNM
        M GPTCS FGWNDEQKCIVAEKEVFDNWVKSH  AKGLLNK FP+YDELS          G+AESFA++G NDPAGYEPFA +ATPD DFQPMYSQGLNM
Subjt:  MCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELS----------GRAESFANIGLNDPAGYEPFAVDATPDTDFQPMYSQGLNM

Query:  SPDELMGIRNA---------------------------------QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKNR
        SPDELM   NA                                 QLEAI ELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPY NIILQ+NR
Subjt:  SPDELMGIRNA---------------------------------QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKNR

A0A5A7UIE9 Retrotransposon protein1.0e-6366.17Show/hide
Query:  MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELS----------GRAESFANIGLNDPAGYEPFAVDATPDTDFQPM
        MFHAIAEM GPTCS FGWNDEQKCIVAEKEVFDNWVKSH  AKGLL K F HYDELS          G AESFA++G N+ AGYEPF  +ATPDT+FQPM
Subjt:  MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELS----------GRAESFANIGLNDPAGYEPFAVDATPDTDFQPM

Query:  YSQGLNMSPDELMGIRNA---------------------------------QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKN
        YSQ LNMSPDELMG RNA                                 QLEAIPELT MDRC LM ILMRNV+DMKAFLEVPDNMKYPYC+IILQ+N
Subjt:  YSQGLNMSPDELMGIRNA---------------------------------QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKN

Query:  R
        R
Subjt:  R

A0A5D3C1J4 Retrotransposon protein1.9e-6571.04Show/hide
Query:  MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELS----------GRAESFANIGLNDPAGYEPFAVDATPDTDFQPM
        MFHAIAEM GPTCS FGWNDEQKCIV EKEVFD+WVKSHPTAKGLLNKSFPHYDELS          GR +SF ++G ND   YE F  DA  DT+FQPM
Subjt:  MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELS----------GRAESFANIGLNDPAGYEPFAVDATPDTDFQPM

Query:  YSQGLNMSPDELMGIRNA---------------QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKNR
        YSQGL+MS DELMG R A               QLE IPELTLMDRC LMRILMRNVDDMKAFLEVPDNMKYPYC+ ILQ+NR
Subjt:  YSQGLNMSPDELMGIRNA---------------QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKNR

A0A5D3CHG6 Retrotransposon protein3.9e-6364.68Show/hide
Query:  MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDEL----------SGRAESFANIGLNDPAGYEPFAVDATPDTDFQPM
        MFHA+AEM GPTC  FGWNDEQKCIVAEKEVFD+WVKSHP AKGLLNK FPHYDEL           GR E+F N+G ND AGYE F  DAT DTDFQ M
Subjt:  MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDEL----------SGRAESFANIGLNDPAGYEPFAVDATPDTDFQPM

Query:  YSQGLNMSPDELMGIRN---------------------------------AQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKN
        YSQGLNMS DELM  R                                   QLEAIPELTLMDRC LMRILMRNVD+MKAFL+VPDNMKYPYCNIILQ+N
Subjt:  YSQGLNMSPDELMGIRN---------------------------------AQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKN

Query:  R
        R
Subjt:  R

A0A5D3D7X4 Retrotransposon protein2.3e-6369.61Show/hide
Query:  MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELS----------GRAESFANIGLNDPAGYEPFAVDATPDTDFQPM
        MFHA+ +M GP CS FG NDE+KCIVAEKEVFD+WVKSHP  KGLLNKSF HYD+LS          GRAESFA++G ND  GY+ FA DA PDTDF PM
Subjt:  MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELS----------GRAESFANIGLNDPAGYEPFAVDATPDTDFQPM

Query:  YSQGLNMSPDELMGIRNA--------------QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKN
        YSQGLNM  D+LMGIR A              QLEAIPELTLMDRCRLMRILMRNVDDMKAFL VPDNMKYPYC+II Q+N
Subjt:  YSQGLNMSPDELMGIRNA--------------QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCATGCAATTGCGGAGATGTGTGGCCCAACTTGCAGTAGATTTGGGTGGAATGATGAACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTTGACAATTGG
GTCAAGAGTCATCCGACGGCCAAGGGCCTCCTTAATAAGTCGTTTCCCCACTATGACGAACTGTCAGGCCGGGCCGAGAGTTTTGCAAACATTGGGTTAAACGAT
CCTGCTGGGTACGAGCCATTTGCCGTTGACGCTACGCCGGATACGGACTTCCAACCTATGTATAGTCAAGGATTGAACATGTCACCTGATGAATTGATGGGAATA
AGAAATGCTCAGTTGGAGGCCATCCCTGAGCTGACATTGATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAG
GTTCCCGACAATATGAAATACCCGTACTGCAACATCATTCTTCAAAAAAACCGA
mRNA sequenceShow/hide mRNA sequence
ATGATTCATGCCTCAGACCTAGTGTGTCGCCAGAGTACGAGAATGAATCGAAGATGTTTTGCCATTCTCTGCCACCTACTAAGGACCATTGGTGGACTAACGTCG
ACCGAAGTCATCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCGCACGACGTGAAAAATCGTGTCATTCAACGGGAGTTCATGCGGTCGGTCAAT
GCTGGTGGGTGGAGGTCTGACAACGGGACGTTTCGGCCCGGGTACCTAAATCAGCTGGCGAGAATGAAGGCCTTCAAGATCCCAGGTTCTAACGTCCATGCTTCA
ACGTCGATAGCCGAATAAAATTGTTGAAGAGAATGTTTCATGCAATTGCGGAGATGTGTGGCCCAACTTGCAGTAGATTTGGGTGGAATGATGAACAAAAATGCA
TCGTCGCAGAGAAAGAAGTCTTTGACAATTGGGTCAAGAGTCATCCGACGGCCAAGGGCCTCCTTAATAAGTCGTTTCCCCACTATGACGAACTGTCAGGCCGGG
CCGAGAGTTTTGCAAACATTGGGTTAAACGATCCTGCTGGGTACGAGCCATTTGCCGTTGACGCTACGCCGGATACGGACTTCCAACCTATGTATAGTCAAGGAT
TGAACATGTCACCTGATGAATTGATGGGAATAAGAAATGCTCAGTTGGAGGCCATCCCTGAGCTGACATTGATGGATAGGTGTCGCTTAATGCGTATACTTATGC
GTAACGTCGATGACATGAAAGCTTTCCTTGAGGTTCCCGACAATATGAAATACCCGTACTGCAACATCATTCTTCAAAAAAACCGA
Protein sequenceShow/hide protein sequence
MFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELSGRAESFANIGLNDPAGYEPFAVDATPDTDFQPMYSQGLNMSPDELMGI
RNAQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQKNR