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MELO3C028701 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C028701
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionPre-mRNA-splicing factor CWC25-like protein
Genome locationchr01:4627288..4631245
RNA-Seq ExpressionMELO3C028701
SyntenyMELO3C028701
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005684 - U2-type spliceosomal complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034965.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa]5.9e-3093.59Show/hide
Query:  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK
        MGEPICMTLVVA GNKILQKKGTVIFFFTFFRKHERLN LYELGL+VGKASN DGFKSLETL SSTIAATATEPSSSK
Subjt:  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK

KAA0037864.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa]1.0e-2993.59Show/hide
Query:  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK
        MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHE LN LYELGL+VGKASN DGFKSLETL SSTIAATATEPSSSK
Subjt:  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK

TYK21842.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa]5.9e-3093.59Show/hide
Query:  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK
        MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLN LYELGL+VGKASN DGFKSLETL SSTIA TATEPSSSK
Subjt:  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK

XP_008462005.1 PREDICTED: uncharacterized protein LOC103500480 isoform X1 [Cucumis melo]9.4e-7699.33Show/hide
Query:  MNEYNISAFLKPTISPIASNFHSPQFHLKLKFPYFLYVSLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFFFT
        MNEYNISAFLKPTISPIASNFHSPQFHLKLKFPYFLYVSLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFFFT
Subjt:  MNEYNISAFLKPTISPIASNFHSPQFHLKLKFPYFLYVSLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFFFT

Query:  FFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKI
        FFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK+
Subjt:  FFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKI

XP_016902821.1 PREDICTED: uncharacterized protein LOC103500480 isoform X2 [Cucumis melo]9.4e-7699.33Show/hide
Query:  MNEYNISAFLKPTISPIASNFHSPQFHLKLKFPYFLYVSLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFFFT
        MNEYNISAFLKPTISPIASNFHSPQFHLKLKFPYFLYVSLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFFFT
Subjt:  MNEYNISAFLKPTISPIASNFHSPQFHLKLKFPYFLYVSLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFFFT

Query:  FFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKI
        FFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK+
Subjt:  FFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKI

TrEMBL top hitse value%identityAlignment
A0A1S3CFU5 uncharacterized protein LOC103500480 isoform X14.5e-7699.33Show/hide
Query:  MNEYNISAFLKPTISPIASNFHSPQFHLKLKFPYFLYVSLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFFFT
        MNEYNISAFLKPTISPIASNFHSPQFHLKLKFPYFLYVSLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFFFT
Subjt:  MNEYNISAFLKPTISPIASNFHSPQFHLKLKFPYFLYVSLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFFFT

Query:  FFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKI
        FFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK+
Subjt:  FFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKI

A0A1S4E3L4 uncharacterized protein LOC103500480 isoform X24.5e-7699.33Show/hide
Query:  MNEYNISAFLKPTISPIASNFHSPQFHLKLKFPYFLYVSLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFFFT
        MNEYNISAFLKPTISPIASNFHSPQFHLKLKFPYFLYVSLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFFFT
Subjt:  MNEYNISAFLKPTISPIASNFHSPQFHLKLKFPYFLYVSLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFFFT

Query:  FFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKI
        FFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK+
Subjt:  FFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKI

A0A5A7T0H4 Pre-mRNA-splicing factor CWC25-like protein2.9e-3093.59Show/hide
Query:  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK
        MGEPICMTLVVA GNKILQKKGTVIFFFTFFRKHERLN LYELGL+VGKASN DGFKSLETL SSTIAATATEPSSSK
Subjt:  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK

A0A5D3CF18 Pre-mRNA-splicing factor CWC25-like protein4.9e-3093.59Show/hide
Query:  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK
        MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHE LN LYELGL+VGKASN DGFKSLETL SSTIAATATEPSSSK
Subjt:  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK

A0A5D3DE30 Pre-mRNA-splicing factor CWC25-like protein2.9e-3093.59Show/hide
Query:  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK
        MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLN LYELGL+VGKASN DGFKSLETL SSTIA TATEPSSSK
Subjt:  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAATATAACATCTCTGCATTTCTCAAACCCACGATTTCACCTATTGCCTCAAATTTCCACAGCCCACAATTTCATCTCAAACTCAAATTTCCTTATTTT
CTCTATGTTTCGTTAGAAGTACAAAAGAAAAGAAGAAGTCGAAGGGATAAAATTTTGTCGTTGCCGCAAAAATTTTCGAGGCAATGTTCTAACGTTTCAGGAGAA
GATATGGGAGAACCCATTTGCATGACTTTGGTCGTTGCCGCCGGTAACAAAATACTTCAGAAGAAGGGAACCGTCATTTTCTTTTTCACATTTTTTAGGAAGCAT
GAGAGATTGAATTTTCTTTATGAATTGGGTTTGAAAGTTGGGAAAGCTAGCAATTTCGATGGATTTAAAAGCCTTGAAACCCTACTTAGTTCAACTATTGCCGCG
ACTGCCACTGAACCATCTAGTTCCAAGATTGTTAATAGAATCAAGAAGTTAAGGAAGAAAGCTGCCCTTGAACCTACAGATACAGTAGAAGTAATGATTGAAGAC
ATATCAGGTTGA
mRNA sequenceShow/hide mRNA sequence
TACAATCCCTCACTTTCTGAATTTCTTTTATTCTCTTCTCAATCTCATCTCACTTTAATCCCTCTCTTCTCTGAACGGCAAGCGCCGCCACCATCTTTAGAAGAA
ATCTCTCGTGCCCGGTCGTTATCGAACCCACCATCGTCGTCCCTCGTGTCCTGCCCGTACCTTGTCATTGTCGAACAGTCCTTCTTCGACTGTCGTTGTGCTCGC
CACCACCGTCGATTCAAACATCTCTACATTTCTATTTAAGGTAGTTTTACTATCATATAGAAAAATGAATGAATATAACATCTCTGCATTTCTCAAACCCACGAT
TTCACCTATTGCCTCAAATTTCCACAGCCCACAATTTCATCTCAAACTCAAATTTCCTTATTTTCTCTATGTTTCGTTAGAAGTACAAAAGAAAAGAAGAAGTCG
AAGGGATAAAATTTTGTCGTTGCCGCAAAAATTTTCGAGGCAATGTTCTAACGTTTCAGGAGAAGATATGGGAGAACCCATTTGCATGACTTTGGTCGTTGCCGC
CGGTAACAAAATACTTCAGAAGAAGGGAACCGTCATTTTCTTTTTCACATTTTTTAGGAAGCATGAGAGATTGAATTTTCTTTATGAATTGGGTTTGAAAGTTGG
GAAAGCTAGCAATTTCGATGGATTTAAAAGCCTTGAAACCCTACTTAGTTCAACTATTGCCGCGACTGCCACTGAACCATCTAGTTCCAAGATTGTTAATAGAAT
CAAGAAGTTAAGGAAGAAAGCTGCCCTTGAACCTACAGATACAGTAGAAGTAATGATTGAAGACATATCAGGTTGAAAGTGAAGCGATTGT
Protein sequenceShow/hide protein sequence
MNEYNISAFLKPTISPIASNFHSPQFHLKLKFPYFLYVSLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKH
ERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKIVNRIKKLRKKAALEPTDTVEVMIEDISG