; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C028720 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C028720
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr05:4372812..4373117
RNA-Seq ExpressionMELO3C028720
SyntenyMELO3C028720
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045600.1 hypothetical protein E6C27_scaffold243G001060 [Cucumis melo var. makuwa]2.2e-0568.42Show/hide
Query:  LKVGLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFD
        ++  LTMVL+PLEV L+I+GR WSFD+SG  LFLAAFD
Subjt:  LKVGLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFD
KAA0047526.1 small ribosomal subunit protein S13 [Cucumis melo var. makuwa]2.6e-0674.36Show/hide
Query:  GLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFDGVRR
        GLT+VL+PLEV LAIRGR WSFD+S   LFLAAF+ VRR
Subjt:  GLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFDGVRR
KAA0052379.1 hypothetical protein E6C27_scaffold207G002260 [Cucumis melo var. makuwa]7.7e-0672.5Show/hide
Query:  MCLKVGLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFD
        MCL  GLTMVL+ LEV LAIRGR WSFD++   LFLAAFD
Subjt:  MCLKVGLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFD
KAA0053193.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-0476.47Show/hide
Query:  GLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAF
        GLTMVL+P EV L I GR WSFD+SG GLFLAAF
Subjt:  GLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAF
TYK30860.1 reactive Intermediate Deaminase A [Cucumis melo var. makuwa]7.7e-0672.5Show/hide
Query:  MCLKVGLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFD
        MCL  GLTMVL+ LEV LAIRGR WSFD++   LFLAAFD
Subjt:  MCLKVGLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFD
TrEMBL top hitse value%identityAlignment
A0A5A7TR50 Uncharacterized protein1.1e-0568.42Show/hide
Query:  LKVGLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFD
        ++  LTMVL+PLEV L+I+GR WSFD+SG  LFLAAFD
Subjt:  LKVGLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFD
A0A5A7UFX3 Uncharacterized protein3.7e-0672.5Show/hide
Query:  MCLKVGLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFD
        MCL  GLTMVL+ LEV LAIRGR WSFD++   LFLAAFD
Subjt:  MCLKVGLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFD
A0A5D3BPV7 Ty3-gypsy retrotransposon protein5.4e-0576.47Show/hide
Query:  GLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAF
        GLTMVL+P EV L I GR WSFD+SG GLFLAAF
Subjt:  GLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAF
A0A5D3DT03 Small ribosomal subunit protein S131.3e-0674.36Show/hide
Query:  GLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFDGVRR
        GLT+VL+PLEV LAIRGR WSFD+S   LFLAAF+ VRR
Subjt:  GLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFDGVRR
A0A5D3E5H8 Reactive Intermediate Deaminase A3.7e-0672.5Show/hide
Query:  MCLKVGLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFD
        MCL  GLTMVL+ LEV LAIRGR WSFD++   LFLAAFD
Subjt:  MCLKVGLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTTAAAGGTTGGTTTAACCATGGTTTTGAAGCCGTTAGAGGTTGATTTAGCCATTAGAGGAAGATGTTGGAGTTTTGACATCAGCGGCAAAGGGCTTTTTTTAGC
AGCGTTTGATGGCGTTCGACGTTGGTCATAG
mRNA sequenceShow/hide mRNA sequence
ACGGTTTCTGATGTTCCAACGGGAAGAGAGACGTTGGTCAATGGAGAGGAAGACGTTAGAGGTTTAGTCGTAGATTTCGAGGCGGACAGAAGATGACGATTTTGCGTTAT
TTATGACAGCTCCAACGATTGTTTCAACAGCTTCGCAATGTGTTTAAAGGTTGGTTTAACCATGGTTTTGAAGCCGTTAGAGGTTGATTTAGCCATTAGAGGAAGATGTT
GGAGTTTTGACATCAGCGGCAAAGGGCTTTTTTTAGCAGCGTTTGATGGCGTTCGACGTTGGTCATAGATTTGCGGTGGGTTATAA
Protein sequenceShow/hide protein sequence
MCLKVGLTMVLKPLEVDLAIRGRCWSFDISGKGLFLAAFDGVRRWS