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MELO3C028897 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C028897
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr01:28539044..28540209
RNA-Seq ExpressionMELO3C028897
SyntenyMELO3C028897
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035960.1 uncharacterized protein E6C27_scaffold56G001640 [Cucumis melo var. makuwa]8.5e-5286.18Show/hide
Query:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEAL
        MIK LGDSH KEMYDLLVEVT+LRKFVEEELH L K+VDEVR EC SRHASNGNAS STS  VVGTH IKVPKP+MYN TRNATMVENFLFGLEQYY+AL
Subjt:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEAL

Query:  GIVDDGAKIANASNFLHESTQLW
        GIVDDGAKIANA NFLHES QLW
Subjt:  GIVDDGAKIANASNFLHESTQLW

KAA0035961.1 uncharacterized protein E6C27_scaffold56G001660 [Cucumis melo var. makuwa]5.2e-4982.11Show/hide
Query:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEAL
        MIKVLGDSH KEMYD+LVEVT+LRKFVEEELH L K+VDEVR E  SRHASNGNAS STS  +VGTH IKVPKP+ YN TRNATMVENFLFGLEQYY+AL
Subjt:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEAL

Query:  GIVDDGAKIANASNFLHESTQLW
        GI+DDGAKIANA NFL ES QLW
Subjt:  GIVDDGAKIANASNFLHESTQLW

KAA0050866.1 uncharacterized protein E6C27_scaffold404G001380 [Cucumis melo var. makuwa]3.7e-2348.46Show/hide
Query:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKD-------VDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGL
        MI+ +G +  KE+ +L   VT L+ FVE ELH L          +D + VEC+S+HA++   S ST     GT  IKVPKP++YN  RNAT+V+NFLFGL
Subjt:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKD-------VDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGL

Query:  EQYYEALGIVDDGAKIANASNFLHESTQLW
        E+Y+ ALG+ DD A+I +AS FL ++ QLW
Subjt:  EQYYEALGIVDDGAKIANASNFLHESTQLW

KAA0059692.1 uncharacterized protein E6C27_scaffold54G001490 [Cucumis melo var. makuwa]1.5e-5694.17Show/hide
Query:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEAL
        MIKV GDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVR ECQSRHASNGNAS STSYIVVGTHGIKVPK +MYN+TRNATMVENFLFGLEQYYE L
Subjt:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEAL

Query:  GIVDDGAKIANASNFLHEST
        GIVDDGAKIANASNFLHEST
Subjt:  GIVDDGAKIANASNFLHEST

TYK30387.1 uncharacterized protein E5676_scaffold575G00690 [Cucumis melo var. makuwa]3.2e-2246.92Show/hide
Query:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKD-------VDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGL
        MI+ +G +  KE+ +L   VT L+ FVE ELH L          +D + VEC+S+H  +   S ST     GT  IKVPKP++YN  RNAT+V+NFLFGL
Subjt:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKD-------VDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGL

Query:  EQYYEALGIVDDGAKIANASNFLHESTQLW
        E+Y+ ALG+ DD A+I +A  FL ++ QLW
Subjt:  EQYYEALGIVDDGAKIANASNFLHESTQLW

TrEMBL top hitse value%identityAlignment
A0A5A7SY30 Retrotrans_gag domain-containing protein4.1e-5286.18Show/hide
Query:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEAL
        MIK LGDSH KEMYDLLVEVT+LRKFVEEELH L K+VDEVR EC SRHASNGNAS STS  VVGTH IKVPKP+MYN TRNATMVENFLFGLEQYY+AL
Subjt:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEAL

Query:  GIVDDGAKIANASNFLHESTQLW
        GIVDDGAKIANA NFLHES QLW
Subjt:  GIVDDGAKIANASNFLHESTQLW

A0A5A7T2W8 Retrotrans_gag domain-containing protein2.5e-4982.11Show/hide
Query:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEAL
        MIKVLGDSH KEMYD+LVEVT+LRKFVEEELH L K+VDEVR E  SRHASNGNAS STS  +VGTH IKVPKP+ YN TRNATMVENFLFGLEQYY+AL
Subjt:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEAL

Query:  GIVDDGAKIANASNFLHESTQLW
        GI+DDGAKIANA NFL ES QLW
Subjt:  GIVDDGAKIANASNFLHESTQLW

A0A5A7U9J4 Retrotrans_gag domain-containing protein1.8e-2348.46Show/hide
Query:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKD-------VDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGL
        MI+ +G +  KE+ +L   VT L+ FVE ELH L          +D + VEC+S+HA++   S ST     GT  IKVPKP++YN  RNAT+V+NFLFGL
Subjt:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKD-------VDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGL

Query:  EQYYEALGIVDDGAKIANASNFLHESTQLW
        E+Y+ ALG+ DD A+I +AS FL ++ QLW
Subjt:  EQYYEALGIVDDGAKIANASNFLHESTQLW

A0A5D3BWR0 Reverse transcriptase1.5e-2247.69Show/hide
Query:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKD-------VDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGL
        MI+ +G +  KE+ +L   VT L+ FVE ELH L          +D + VEC+S+HA++   S ST     GT  IKVPKP++YN  RNAT+V+NFLFGL
Subjt:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKD-------VDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGL

Query:  EQYYEALGIVDDGAKIANASNFLHESTQLW
        E+Y+ ALG+ DD A+I +A  FL ++ QLW
Subjt:  EQYYEALGIVDDGAKIANASNFLHESTQLW

A0A5D3DRU7 Uncharacterized protein7.3e-5794.17Show/hide
Query:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEAL
        MIKV GDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVR ECQSRHASNGNAS STSYIVVGTHGIKVPK +MYN+TRNATMVENFLFGLEQYYE L
Subjt:  MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEAL

Query:  GIVDDGAKIANASNFLHEST
        GIVDDGAKIANASNFLHEST
Subjt:  GIVDDGAKIANASNFLHEST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAAAGTCCTTGGAGACTCGCATGATAAAGAGATGTATGATCTTCTTGTTGAGGTAACTGACCTACGAAAGTTCGTGGAAGAGGAACTTCACGTCTTGTGGAAGGA
CGTCGACGAGGTACGTGTCGAATGTCAATCTAGACATGCTAGTAATGGTAATGCATCCATTAGCACATCATACATCGTTGTAGGCACCCACGGTATTAAAGTGCCAAAAC
CTAACATGTATAACAACACAAGGAATGCCACAATGGTGGAGAATTTCCTATTTGGCCTTGAGCAATATTATGAGGCCTTAGGAATCGTCGACGATGGTGCCAAAATCGCG
AATGCCTCTAATTTCCTACACGAGTCGACACAACTATGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCGGGTTGATGGAAGAGTTAGTCTAAGATAACGTGAAGATCTCAAAAGTCGCCAAGTAAATGATCAAAGTCCTTGGAGACTCGCATGATAAAGAGATGTATGATCT
TCTTGTTGAGGTAACTGACCTACGAAAGTTCGTGGAAGAGGAACTTCACGTCTTGTGGAAGGACGTCGACGAGGTACGTGTCGAATGTCAATCTAGACATGCTAGTAATG
GTAATGCATCCATTAGCACATCATACATCGTTGTAGGCACCCACGGTATTAAAGTGCCAAAACCTAACATGTATAACAACACAAGGAATGCCACAATGGTGGAGAATTTC
CTATTTGGCCTTGAGCAATATTATGAGGCCTTAGGAATCGTCGACGATGGTGCCAAAATCGCGAATGCCTCTAATTTCCTACACGAGTCGACACAACTATGGTAGCATAG
GAAGCATGCGGAACGGAAGAAGGACCGCACAATCTTACGAACGTGGGAACAATTCAAGGTAGAACTCCGAAAGCACTTTGTTCTCCACAATGCTGACATGGAGGCACAAG
GTAAGTTGAGGAGATTAAGGTAAACTGGTGGCATTCTCGAGTATATAAAGGAGTTCACTACTCTAATGTTGGAAATAGAAGATCTATCAGGCAAGGATGCTTCCTTTCAT
TTTAGAGACGGTCTTAAAGATTGGGAAAAAATTGAGCTCGATAGGTGCAACGTGCAAACGCTTGATGATGCTATTTCTACAGCCCAAGTACTCATTGACATTTCCTCCAA
GGAGAAGAAGATCCACATAGATTAAGGAGATGGGTCTGAGCCGAAGAAAGAGGAGAACTTTAAACAAGATGAGAAGCATGGAAAGGCCTCGTTTACCAACAAAGGTATGA
CTCCTTTACCTTGAGTCTTATGTAATGATCCACATTAGACAAGAGACTGCCTAAAGAAGAACAAGTTGAGTGTAATGGTGGCCAATACACACGATGAAGAGGAGGCATCA
GTGAAAAGGTCGGCATAGATAGATGCAATTCGATACTTAAGTGCAATGGACAGTGATTCCTCTAAAGAACCTCAAGAGAGAGGTTGATTGTATGTGGATGCCACACTCAA
TAACAAGGTTGCCTTAGCAATATTAGACACAGGCGCAACAAAAAATGTGATGGATCCTAAAGAGGC
Protein sequenceShow/hide protein sequence
MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEALGIVDDGAKIA
NASNFLHESTQLW