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MELO3C029564 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C029564
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr02:10454007..10457210
RNA-Seq ExpressionMELO3C029564
SyntenyMELO3C029564
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33999.1 hypothetical protein [Cucumis melo subsp. melo]4.2e-2560.19Show/hide
Query:  ITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSVSSGFGTDQY------------------------------VEAGVKTRASWRETRSDRGEPKEF
        + TY GL SPTGPPVWHGYRYDS DST SSQPDCLSVSSGF TDQY                              VE GV+ RASWR TRSDR EP EF
Subjt:  ITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSVSSGFGTDQY------------------------------VEAGVKTRASWRETRSDRGEPKEF

Query:  LLPLYTPF
        LLPLYTPF
Subjt:  LLPLYTPF

KAA0032628.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]2.2e-2641.58Show/hide
Query:  QPEPVAELIDTHPSSSHHVRISAAPPSRSCGAPSSSPSSQLLSHSRAASPLVPSESNATRDRSQPEQ--PREDRSASRRRRSNASSRS-APPPDSSVQPP
        QP+P A       SSSHHVRIS A  SRS GAP           S    PL    S    D + P +  P E  +   R RS  S+R+ APPPD SVQP 
Subjt:  QPEPVAELIDTHPSSSHHVRISAAPPSRSCGAPSSSPSSQLLSHSRAASPLVPSESNATRDRSQPEQ--PREDRSASRRRRSNASSRS-APPPDSSVQPP

Query:  RARVHPQAASRTLASRARAHTR---PRPSSRADSQSSRVSLLPSSRVDP-YSSSRAAKPLLEPPSLFRNILDQLTL-ERWISSIRAQALQPRPRLIGVVL
              ++  R  ASR  A+TR   PRPS RADSQ SRV LLP ++ +P +  SR               LDQL    +  SS       P  R      
Subjt:  RARVHPQAASRTLASRARAHTR---PRPSSRADSQSSRVSLLPSSRVDP-YSSSRAAKPLLEPPSLFRNILDQLTL-ERWISSIRAQALQPRPRLIGVVL

Query:  ASVSFGITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSVSSGFGTDQY------------------------------VEAGVKTRASWRETRSDR
                    LRSPTG PVWHGYRYD  DSTGSSQ DCLSVSSGF TD Y                              VEAGV+ R SWR TRSDR
Subjt:  ASVSFGITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSVSSGFGTDQY------------------------------VEAGVKTRASWRETRSDR

Query:  GEP
        GEP
Subjt:  GEP

KAA0041923.1 hypothetical protein E6C27_scaffold67G003350 [Cucumis melo var. makuwa]9.3e-3353.57Show/hide
Query:  LLPSSRVDPYSSSRAAKPLLEPPSLFRNILDQLT-------LERWISSIRAQALQPRPRLIGVVLASVSFGITTYLGLRSPTGPPVWHGYRYDSIDSTGS
        LLP  + +P  + ++++ LL  PS  + +L+ L        + RWISS+RAQALQPRPR I VV A VSFGITTYLGLRSPTGPPVWHGY+YDS DSTGS
Subjt:  LLPSSRVDPYSSSRAAKPLLEPPSLFRNILDQLT-------LERWISSIRAQALQPRPRLIGVVLASVSFGITTYLGLRSPTGPPVWHGYRYDSIDSTGS

Query:  SQPDCLSVSSGFGTDQY------------------------------VEAGVKTRASWRETRSDRGEP
        S+PDCLSVSSGF T QY                              VE  V+ RASWR TRSDRGEP
Subjt:  SQPDCLSVSSGFGTDQY------------------------------VEAGVKTRASWRETRSDRGEP

KAA0047454.1 hypothetical protein E6C27_scaffold498G00580 [Cucumis melo var. makuwa]4.6e-2459.32Show/hide
Query:  IGVVLASVSFGITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSVSSGFGTDQY------------------------------VEAGVKTRASWRE
        I VV A VSFGITTYLGLRSPTGPPVWHG RYDS DSTGSSQPDCLSVS GF TDQY                              VEAGV+ RASWR 
Subjt:  IGVVLASVSFGITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSVSSGFGTDQY------------------------------VEAGVKTRASWRE

Query:  TRSDRGEPKEFLLPLYTP
        TRSDRGE ++ L   +TP
Subjt:  TRSDRGEPKEFLLPLYTP

TYK00158.1 hypothetical protein E5676_scaffold2510G00500 [Cucumis melo var. makuwa]3.5e-2440.94Show/hide
Query:  DRSASRRRRSNASSRSAP----------PPDSSVQPPR--ARVHPQAASRTLASRARAHTRPRPSSRADS-QSSRVSLLPSSRVDPYSSSRAAKPLLEP-
        DR     RR+  +SR  P           PDS+   PR  + +   A+SRT               RADS  SSR     SSR D   SSRA  P+L+P 
Subjt:  DRSASRRRRSNASSRSAP----------PPDSSVQPPR--ARVHPQAASRTLASRARAHTRPRPSSRADS-QSSRVSLLPSSRVDPYSSSRAAKPLLEP-

Query:  ----PSLFRNILDQLTL-----------------ERWISSIRAQALQPRPRLIGVVLASVSFGITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSV
            P  + + LDQL                   +R   ++R +    +P  I V+ A VSFGITTYLGLRSPT  PVWHGYRYDS DS GSSQPDC S+
Subjt:  ----PSLFRNILDQLTL-----------------ERWISSIRAQALQPRPRLIGVVLASVSFGITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSV

Query:  SSGFGTDQY------------------------VEAGVKTRASWRETRSDRGEP
        SSGF TDQY                        V A V+ RASWR TRSDRGEP
Subjt:  SSGFGTDQY------------------------VEAGVKTRASWRETRSDRGEP

TrEMBL top hitse value%identityAlignment
A0A5A7SQ15 Retrotransposon protein, putative, Ty3-gypsy subclass1.1e-2641.58Show/hide
Query:  QPEPVAELIDTHPSSSHHVRISAAPPSRSCGAPSSSPSSQLLSHSRAASPLVPSESNATRDRSQPEQ--PREDRSASRRRRSNASSRS-APPPDSSVQPP
        QP+P A       SSSHHVRIS A  SRS GAP           S    PL    S    D + P +  P E  +   R RS  S+R+ APPPD SVQP 
Subjt:  QPEPVAELIDTHPSSSHHVRISAAPPSRSCGAPSSSPSSQLLSHSRAASPLVPSESNATRDRSQPEQ--PREDRSASRRRRSNASSRS-APPPDSSVQPP

Query:  RARVHPQAASRTLASRARAHTR---PRPSSRADSQSSRVSLLPSSRVDP-YSSSRAAKPLLEPPSLFRNILDQLTL-ERWISSIRAQALQPRPRLIGVVL
              ++  R  ASR  A+TR   PRPS RADSQ SRV LLP ++ +P +  SR               LDQL    +  SS       P  R      
Subjt:  RARVHPQAASRTLASRARAHTR---PRPSSRADSQSSRVSLLPSSRVDP-YSSSRAAKPLLEPPSLFRNILDQLTL-ERWISSIRAQALQPRPRLIGVVL

Query:  ASVSFGITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSVSSGFGTDQY------------------------------VEAGVKTRASWRETRSDR
                    LRSPTG PVWHGYRYD  DSTGSSQ DCLSVSSGF TD Y                              VEAGV+ R SWR TRSDR
Subjt:  ASVSFGITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSVSSGFGTDQY------------------------------VEAGVKTRASWRETRSDR

Query:  GEP
        GEP
Subjt:  GEP

A0A5A7TFE7 Uncharacterized protein4.5e-3353.57Show/hide
Query:  LLPSSRVDPYSSSRAAKPLLEPPSLFRNILDQLT-------LERWISSIRAQALQPRPRLIGVVLASVSFGITTYLGLRSPTGPPVWHGYRYDSIDSTGS
        LLP  + +P  + ++++ LL  PS  + +L+ L        + RWISS+RAQALQPRPR I VV A VSFGITTYLGLRSPTGPPVWHGY+YDS DSTGS
Subjt:  LLPSSRVDPYSSSRAAKPLLEPPSLFRNILDQLT-------LERWISSIRAQALQPRPRLIGVVLASVSFGITTYLGLRSPTGPPVWHGYRYDSIDSTGS

Query:  SQPDCLSVSSGFGTDQY------------------------------VEAGVKTRASWRETRSDRGEP
        S+PDCLSVSSGF T QY                              VE  V+ RASWR TRSDRGEP
Subjt:  SQPDCLSVSSGFGTDQY------------------------------VEAGVKTRASWRETRSDRGEP

A0A5A7TWW6 Uncharacterized protein2.2e-2459.32Show/hide
Query:  IGVVLASVSFGITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSVSSGFGTDQY------------------------------VEAGVKTRASWRE
        I VV A VSFGITTYLGLRSPTGPPVWHG RYDS DSTGSSQPDCLSVS GF TDQY                              VEAGV+ RASWR 
Subjt:  IGVVLASVSFGITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSVSSGFGTDQY------------------------------VEAGVKTRASWRE

Query:  TRSDRGEPKEFLLPLYTP
        TRSDRGE ++ L   +TP
Subjt:  TRSDRGEPKEFLLPLYTP

A0A5D3BM16 Uncharacterized protein1.7e-2440.94Show/hide
Query:  DRSASRRRRSNASSRSAP----------PPDSSVQPPR--ARVHPQAASRTLASRARAHTRPRPSSRADS-QSSRVSLLPSSRVDPYSSSRAAKPLLEP-
        DR     RR+  +SR  P           PDS+   PR  + +   A+SRT               RADS  SSR     SSR D   SSRA  P+L+P 
Subjt:  DRSASRRRRSNASSRSAP----------PPDSSVQPPR--ARVHPQAASRTLASRARAHTRPRPSSRADS-QSSRVSLLPSSRVDPYSSSRAAKPLLEP-

Query:  ----PSLFRNILDQLTL-----------------ERWISSIRAQALQPRPRLIGVVLASVSFGITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSV
            P  + + LDQL                   +R   ++R +    +P  I V+ A VSFGITTYLGLRSPT  PVWHGYRYDS DS GSSQPDC S+
Subjt:  ----PSLFRNILDQLTL-----------------ERWISSIRAQALQPRPRLIGVVLASVSFGITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSV

Query:  SSGFGTDQY------------------------VEAGVKTRASWRETRSDRGEP
        SSGF TDQY                        V A V+ RASWR TRSDRGEP
Subjt:  SSGFGTDQY------------------------VEAGVKTRASWRETRSDRGEP

E5GC00 Uncharacterized protein2.0e-2560.19Show/hide
Query:  ITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSVSSGFGTDQY------------------------------VEAGVKTRASWRETRSDRGEPKEF
        + TY GL SPTGPPVWHGYRYDS DST SSQPDCLSVSSGF TDQY                              VE GV+ RASWR TRSDR EP EF
Subjt:  ITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSVSSGFGTDQY------------------------------VEAGVKTRASWRETRSDRGEPKEF

Query:  LLPLYTPF
        LLPLYTPF
Subjt:  LLPLYTPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGAACCCTAGCAAGCTACCGCCGCCGCCCTCCGCCAATCATCGCCGTCAAGCATCCGTCACAGATCAGCCCGAGCCAGTAGCCGAGCTGATCGACACCCATCCGAGCTC
CAGCCATCACGTACGGATCTCAGCCGCACCTCCAAGTCGATCATGTGGAGCCCCGTCGTCCAGCCCATCGTCGCAGCTTCTATCGCATAGTCGAGCCGCGTCGCCACTCG
TCCCGAGTGAGTCAAACGCCACCCGCGACCGCAGCCAACCCGAACAGCCGCGTGAAGACCGATCCGCTTCGCGTCGCCGTCGGTCGAACGCATCCAGCCGCTCCGCGCCG
CCACCCGACTCGAGTGTCCAGCCACCCCGCGCCCGCGTGCACCCGCAAGCCGCGTCGCGTACACTCGCAAGCCGCGCTCGTGCGCACACGCGCCCGCGCCCTTCTTCGCG
AGCCGATTCCCAGTCGAGCCGCGTCTCCCTTTTGCCTTCAAGCCGAGTCGATCCCTACTCTTCCAGCCGAGCCGCCAAACCCCTTCTTGAACCACCTAGCCTTTTTCGAA
ACATCTTGGACCAATTGACTTTGGAGCGTTGGATTTCTTCAATAAGGGCTCAAGCGTTGCAACCTCGACCTAGGCTTATTGGAGTCGTACTTGCATCGGTGTCCTTCGGG
ATCACCACATATTTAGGACTGCGTAGTCCGACGGGACCGCCAGTCTGGCATGGATATAGATATGATTCGATTGATTCAACGGGATCCTCGCAGCCCGATTGTCTTAGTGT
TTCCTCGGGGTTCGGTACAGACCAGTATGTAGAGGCAGGGGTAAAGACAAGGGCAAGCTGGCGGGAGACCAGAAGTGATCGTGGCGAGCCAAAGGAATTTCTGCTTCCGC
TTTACACCCCGTTTAAACTTTTAATAGATCTTTTAGATAGATCAACCATGTCATGCCCTGCTCTAAATGTCACTCCATGCGACCACATGATGGTGTGCCGCCTTGACTTC
CATTACGTATCTCTCGGCGAGATGACCTCTTCGGCTCTCTGGCTCATCGGGTTTAGCCTCACCAACCTAGATATTGCACTCGCCTTCCTTTCGAGTCAGGCCATTTATAC
TAAAGAGCAATGCACTTACCAACTGGCTCCTTAG
mRNA sequenceShow/hide mRNA sequence
AGGAACCCTAGCAAGCTACCGCCGCCGCCCTCCGCCAATCATCGCCGTCAAGCATCCGTCACAGATCAGCCCGAGCCAGTAGCCGAGCTGATCGACACCCATCCGAGCTC
CAGCCATCACGTACGGATCTCAGCCGCACCTCCAAGTCGATCATGTGGAGCCCCGTCGTCCAGCCCATCGTCGCAGCTTCTATCGCATAGTCGAGCCGCGTCGCCACTCG
TCCCGAGTGAGTCAAACGCCACCCGCGACCGCAGCCAACCCGAACAGCCGCGTGAAGACCGATCCGCTTCGCGTCGCCGTCGGTCGAACGCATCCAGCCGCTCCGCGCCG
CCACCCGACTCGAGTGTCCAGCCACCCCGCGCCCGCGTGCACCCGCAAGCCGCGTCGCGTACACTCGCAAGCCGCGCTCGTGCGCACACGCGCCCGCGCCCTTCTTCGCG
AGCCGATTCCCAGTCGAGCCGCGTCTCCCTTTTGCCTTCAAGCCGAGTCGATCCCTACTCTTCCAGCCGAGCCGCCAAACCCCTTCTTGAACCACCTAGCCTTTTTCGAA
ACATCTTGGACCAATTGACTTTGGAGCGTTGGATTTCTTCAATAAGGGCTCAAGCGTTGCAACCTCGACCTAGGCTTATTGGAGTCGTACTTGCATCGGTGTCCTTCGGG
ATCACCACATATTTAGGACTGCGTAGTCCGACGGGACCGCCAGTCTGGCATGGATATAGATATGATTCGATTGATTCAACGGGATCCTCGCAGCCCGATTGTCTTAGTGT
TTCCTCGGGGTTCGGTACAGACCAGTATGTAGAGGCAGGGGTAAAGACAAGGGCAAGCTGGCGGGAGACCAGAAGTGATCGTGGCGAGCCAAAGGAATTTCTGCTTCCGC
TTTACACCCCGTTTAAACTTTTAATAGATCTTTTAGATAGATCAACCATGTCATGCCCTGCTCTAAATGTCACTCCATGCGACCACATGATGGTGTGCCGCCTTGACTTC
CATTACGTATCTCTCGGCGAGATGACCTCTTCGGCTCTCTGGCTCATCGGGTTTAGCCTCACCAACCTAGATATTGCACTCGCCTTCCTTTCGAGTCAGGCCATTTATAC
TAAAGAGCAATGCACTTACCAACTGGCTCCTTAG
Protein sequenceShow/hide protein sequence
RNPSKLPPPPSANHRRQASVTDQPEPVAELIDTHPSSSHHVRISAAPPSRSCGAPSSSPSSQLLSHSRAASPLVPSESNATRDRSQPEQPREDRSASRRRRSNASSRSAP
PPDSSVQPPRARVHPQAASRTLASRARAHTRPRPSSRADSQSSRVSLLPSSRVDPYSSSRAAKPLLEPPSLFRNILDQLTLERWISSIRAQALQPRPRLIGVVLASVSFG
ITTYLGLRSPTGPPVWHGYRYDSIDSTGSSQPDCLSVSSGFGTDQYVEAGVKTRASWRETRSDRGEPKEFLLPLYTPFKLLIDLLDRSTMSCPALNVTPCDHMMVCRLDF
HYVSLGEMTSSALWLIGFSLTNLDIALAFLSSQAIYTKEQCTYQLAP