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MELO3C030093 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C030093
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr03:8026956..8027677
RNA-Seq ExpressionMELO3C030093
SyntenyMELO3C030093
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044843.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-7677.6Show/hide
Query:  SHPATKGLLNKSFPHYEELSYEFGKDQMGGWR-ESFADVGSNDPTGYDA-----APDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGH
        SHPA KGLLNKSF HY+ELSY FGKD+  G R ESFAD+GSNDP GYDA      PDTDFP MYS GLNMS DDLM TRTARV E +N SSGSKRKR GH
Subjt:  SHPATKGLLNKSFPHYEELSYEFGKDQMGGWR-ESFADVGSNDPTGYDA-----APDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGH

Query:  SVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR
        ++DSGDI+RT+IEYGNEQL+RI EW +LQ QDA++TRQE+VRQLE IPELTLMDRC LMRI+M NVDDMKAFL+VPDNMKYPYCSIILQENR
Subjt:  SVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR

KAA0055439.1 retrotransposon protein [Cucumis melo var. makuwa]5.7e-85100Show/hide
Query:  MGGWRESFADVGSNDPTGYDAAPDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGHSVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDA
        MGGWRESFADVGSNDPTGYDAAPDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGHSVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDA
Subjt:  MGGWRESFADVGSNDPTGYDAAPDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGHSVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDA

Query:  SETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR
        SETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR
Subjt:  SETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR

KAA0061841.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-7676.56Show/hide
Query:  SHPATKGLLNKSFPHYEELSYEFGKDQ-MGGWRESFADVGSNDPTGY-----DAAPDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGH
        SHP  KGLLNKSF HY+ELSY FGKD+  GGW ESFAD+GSN P GY     DAAPDTDFP MYS GLN+S DDLM TRTARV+E +N SS SKRKR  H
Subjt:  SHPATKGLLNKSFPHYEELSYEFGKDQ-MGGWRESFADVGSNDPTGY-----DAAPDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGH

Query:  SVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR
        ++DSGDI+RT+IEYGNEQ +RI EWP+LQ QDAS+TRQE+VRQLE I ELTLMDRCHLMRILM NVDDMKAFL+VPDNMKYPYC+IILQENR
Subjt:  SVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR

KAA0065737.1 retrotransposon protein [Cucumis melo var. makuwa]9.7e-7777.6Show/hide
Query:  SHPATKGLLNKSFPHYEELSYEFGKDQ-MGGWRESFADVGSNDPTGY-----DAAPDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGH
        SHPA KGLLNKSF HY+ELSY FGKD+  GG  ESFAD+GSNDP GY     DA PDTDFP MYS GLNMS DDLM TRTARV E +N SS SKRKR GH
Subjt:  SHPATKGLLNKSFPHYEELSYEFGKDQ-MGGWRESFADVGSNDPTGY-----DAAPDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGH

Query:  SVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR
        + DSGDI+RT+IEYGNEQL+RI EWP+LQ QDA++TRQ++VRQLE IPELTLMDRC LMRILM NVDDMKAFL+VPDNMKYPYCSIILQENR
Subjt:  SVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR

KAA0065892.1 retrotransposon protein [Cucumis melo var. makuwa]9.7e-7778.12Show/hide
Query:  SHPATKGLLNKSFPHYEELSYEFGKD-QMGGWRESFADVGSNDPTGYDA-----APDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGH
        SHPA KGLLNK F HY+E SY FGKD   GG  ESFAD+GSNDP GYDA      PDTDFP MYS GLNMS DDLM TRTARV E +N SSGSKRKR GH
Subjt:  SHPATKGLLNKSFPHYEELSYEFGKD-QMGGWRESFADVGSNDPTGYDA-----APDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGH

Query:  SVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR
        + DSGDI+RT+IEYGNEQL+RI EWP+LQ QDA++TRQE+VRQLEVIPELTLMDRC LMRILM NVDDMKAFL+VPDNMKYPYCSIILQENR
Subjt:  SVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR

TrEMBL top hitse value%identityAlignment
A0A5A7TMW5 Retrotransposon protein6.1e-7777.6Show/hide
Query:  SHPATKGLLNKSFPHYEELSYEFGKDQMGGWR-ESFADVGSNDPTGYDA-----APDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGH
        SHPA KGLLNKSF HY+ELSY FGKD+  G R ESFAD+GSNDP GYDA      PDTDFP MYS GLNMS DDLM TRTARV E +N SSGSKRKR GH
Subjt:  SHPATKGLLNKSFPHYEELSYEFGKDQMGGWR-ESFADVGSNDPTGYDA-----APDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGH

Query:  SVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR
        ++DSGDI+RT+IEYGNEQL+RI EW +LQ QDA++TRQE+VRQLE IPELTLMDRC LMRI+M NVDDMKAFL+VPDNMKYPYCSIILQENR
Subjt:  SVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR

A0A5A7UPP6 Retrotransposon protein2.7e-85100Show/hide
Query:  MGGWRESFADVGSNDPTGYDAAPDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGHSVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDA
        MGGWRESFADVGSNDPTGYDAAPDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGHSVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDA
Subjt:  MGGWRESFADVGSNDPTGYDAAPDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGHSVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDA

Query:  SETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR
        SETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR
Subjt:  SETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR

A0A5A7V7X0 Retrotransposon protein6.1e-7776.56Show/hide
Query:  SHPATKGLLNKSFPHYEELSYEFGKDQ-MGGWRESFADVGSNDPTGY-----DAAPDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGH
        SHP  KGLLNKSF HY+ELSY FGKD+  GGW ESFAD+GSN P GY     DAAPDTDFP MYS GLN+S DDLM TRTARV+E +N SS SKRKR  H
Subjt:  SHPATKGLLNKSFPHYEELSYEFGKDQ-MGGWRESFADVGSNDPTGY-----DAAPDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGH

Query:  SVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR
        ++DSGDI+RT+IEYGNEQ +RI EWP+LQ QDAS+TRQE+VRQLE I ELTLMDRCHLMRILM NVDDMKAFL+VPDNMKYPYC+IILQENR
Subjt:  SVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR

A0A5A7VC47 Retrotransposon protein4.7e-7778.12Show/hide
Query:  SHPATKGLLNKSFPHYEELSYEFGKD-QMGGWRESFADVGSNDPTGYDA-----APDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGH
        SHPA KGLLNK F HY+E SY FGKD   GG  ESFAD+GSNDP GYDA      PDTDFP MYS GLNMS DDLM TRTARV E +N SSGSKRKR GH
Subjt:  SHPATKGLLNKSFPHYEELSYEFGKD-QMGGWRESFADVGSNDPTGYDA-----APDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGH

Query:  SVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR
        + DSGDI+RT+IEYGNEQL+RI EWP+LQ QDA++TRQE+VRQLEVIPELTLMDRC LMRILM NVDDMKAFL+VPDNMKYPYCSIILQENR
Subjt:  SVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR

A0A5A7VF53 Retrotransposon protein4.7e-7777.6Show/hide
Query:  SHPATKGLLNKSFPHYEELSYEFGKDQ-MGGWRESFADVGSNDPTGY-----DAAPDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGH
        SHPA KGLLNKSF HY+ELSY FGKD+  GG  ESFAD+GSNDP GY     DA PDTDFP MYS GLNMS DDLM TRTARV E +N SS SKRKR GH
Subjt:  SHPATKGLLNKSFPHYEELSYEFGKDQ-MGGWRESFADVGSNDPTGY-----DAAPDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGH

Query:  SVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR
        + DSGDI+RT+IEYGNEQL+RI EWP+LQ QDA++TRQ++VRQLE IPELTLMDRC LMRILM NVDDMKAFL+VPDNMKYPYCSIILQENR
Subjt:  SVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCGTCGCAGAGAAAGAAGTCTTCAACGATTGGGTCAAGGTGCATTACTAAGTCATCCGGCGACGAAGGGCCTCCTTAATAAGTCATTTCCCCACTATGAA
GAATTGTCGTACGAGTTTGGCAAAGATCAAATGGGAGGCTGGAGAGAGAGTTTTGCGGACGTTGGGTCAAACGATCCTACTGGGTATGACGCTGCGCCAGATACG
GACTTCCCGTCAATGTACAGTCAGGGTTTGAACATGTCGCTTGATGATTTGATGGGAACAAGAACTGCTCGGGTCCATGAACATCAGAATGCTTCAAGCGGGTCT
AAGCGAAAACGTGCAGGACATTCCGTAGATAGTGGGGACATAATTCGCACTTCGATTGAGTACGGAAATGAACAACTGAACCGCATTGTTGAATGGCCTGTCCTA
CAACATCAAGACGCAAGCGAAACACGTCAAGAGGTTGTCCGACAATTGGAGGTCATCCCTGAGCTGACATTGATGGATAGATGTCACTTAATGCGTATACTTATG
CATAACGTCGATGACATGAAAGCTTTCCTTGACGTTCCTGACAATATGAAGTACCCATACTGCAGCATCATTCTTCAAGAAAATCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCATCGTCGCAGAGAAAGAAGTCTTCAACGATTGGGTCAAGGTGCATTACTAAGTCATCCGGCGACGAAGGGCCTCCTTAATAAGTCATTTCCCCACTATGAA
GAATTGTCGTACGAGTTTGGCAAAGATCAAATGGGAGGCTGGAGAGAGAGTTTTGCGGACGTTGGGTCAAACGATCCTACTGGGTATGACGCTGCGCCAGATACG
GACTTCCCGTCAATGTACAGTCAGGGTTTGAACATGTCGCTTGATGATTTGATGGGAACAAGAACTGCTCGGGTCCATGAACATCAGAATGCTTCAAGCGGGTCT
AAGCGAAAACGTGCAGGACATTCCGTAGATAGTGGGGACATAATTCGCACTTCGATTGAGTACGGAAATGAACAACTGAACCGCATTGTTGAATGGCCTGTCCTA
CAACATCAAGACGCAAGCGAAACACGTCAAGAGGTTGTCCGACAATTGGAGGTCATCCCTGAGCTGACATTGATGGATAGATGTCACTTAATGCGTATACTTATG
CATAACGTCGATGACATGAAAGCTTTCCTTGACGTTCCTGACAATATGAAGTACCCATACTGCAGCATCATTCTTCAAGAAAATCGATGACTAGTTTGTTTGTTG
TATTTGTAGTAATGAAACTTATTT
Protein sequenceShow/hide protein sequence
MHRRRERSLQRLGQGALLSHPATKGLLNKSFPHYEELSYEFGKDQMGGWRESFADVGSNDPTGYDAAPDTDFPSMYSQGLNMSLDDLMGTRTARVHEHQNASSGS
KRKRAGHSVDSGDIIRTSIEYGNEQLNRIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYPYCSIILQENR