; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C030121 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C030121
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr06:27646604..27651020
RNA-Seq ExpressionMELO3C030121
SyntenyMELO3C030121
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035629.1 retrotransposon protein [Cucumis melo var. makuwa]5.9e-4366.43Show/hide
Query:  SDRARYRTRKGEVATTNHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVS
        +D     + K +  T  HP AKGLLNKSF +Y++LSYVFGKD A  GWAE+F D+ SN   GY+AF  DA PDTNF  MYS GLNMSPD+LM TRTARVS
Subjt:  SDRARYRTRKGEVATTNHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVS

Query:  EGRYVLSGSKRKRGGQATDSGDVLRTTIEYGNEQLNRIAE
        E R V SGSKRKR G ATDSGD++RT IEYGNEQL+RIAE
Subjt:  EGRYVLSGSKRKRGGQATDSGDVLRTTIEYGNEQLNRIAE

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]2.8e-4577.42Show/hide
Query:  NHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYVLSGSKRKRGGQ
        +HP AKGLLNKSF HY++LSYVF KD A  G AESF DV SND  GY+AFA +AA DT+FQ MYS+GLNMSPDELMGTRTARVSEGRYV SGSK+KRGG 
Subjt:  NHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYVLSGSKRKRGGQ

Query:  ATDSGDVLRTTIEYGNEQLNRIAE
          DSGD+LRT IEYGNEQLNRIAE
Subjt:  ATDSGDVLRTTIEYGNEQLNRIAE

KAA0060558.1 retrotransposon protein [Cucumis melo var. makuwa]4.4e-6298.39Show/hide
Query:  NHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYVLSGSKRKRGGQ
        NHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGW ESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYV SGSKRKRGGQ
Subjt:  NHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYVLSGSKRKRGGQ

Query:  ATDSGDVLRTTIEYGNEQLNRIAE
        ATDSGDVLRTTIEYGNEQLNRIAE
Subjt:  ATDSGDVLRTTIEYGNEQLNRIAE

KAA0060558.1 retrotransposon protein [Cucumis melo var. makuwa]2.8e-0894.12Show/hide
Query:  QNCLGALDGTYIKVNIPASDRARYRTRKGEVATT
        +NCLGALDGTYIKVNIPASDRARYRT KGEVATT
Subjt:  QNCLGALDGTYIKVNIPASDRARYRTRKGEVATT

KAA0060558.1 retrotransposon protein [Cucumis melo var. makuwa]8.8e-4779.84Show/hide
Query:  NHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYVLSGSKRKRGGQ
        +HPTAKGLLNKSF HY++LSYVFGKDRA  G AESF D+  ND  GYE FA+DA PDT+FQ MYSQGLNMSPDELMG R A+VSEGRYV SGSKRKR GQ
Subjt:  NHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYVLSGSKRKRGGQ

Query:  ATDSGDVLRTTIEYGNEQLNRIAE
        ATDSGDVLRT IEYGNEQLN IAE
Subjt:  ATDSGDVLRTTIEYGNEQLNRIAE

KAA0067471.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-4370.15Show/hide
Query:  RTRKGEVATTNHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYVL
        R +   +   +H  AKGLLNKSF HY++ S+VFGKD A RGWAESF DV S D  GY+AFA DAAPDTNF  MYSQ LNMSPD+LMGTRTARVSE R V 
Subjt:  RTRKGEVATTNHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYVL

Query:  SGSKRKRGGQATDSGDVLRTTIEYGNEQLNRIAE
        SGSKRKR G   DSGD++RT IEYGNEQLNRIAE
Subjt:  SGSKRKRGGQATDSGDVLRTTIEYGNEQLNRIAE

TrEMBL top hitse value%identityAlignment
A0A5A7TZA5 Retrotransposon protein1.4e-4577.42Show/hide
Query:  NHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYVLSGSKRKRGGQ
        +HP AKGLLNKSF HY++LSYVF KD A  G AESF DV SND  GY+AFA +AA DT+FQ MYS+GLNMSPDELMGTRTARVSEGRYV SGSK+KRGG 
Subjt:  NHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYVLSGSKRKRGGQ

Query:  ATDSGDVLRTTIEYGNEQLNRIAE
          DSGD+LRT IEYGNEQLNRIAE
Subjt:  ATDSGDVLRTTIEYGNEQLNRIAE

A0A5A7VPH9 Retrotransposon protein9.8e-4470.15Show/hide
Query:  RTRKGEVATTNHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYVL
        R +   +   +H  AKGLLNKSF HY++ S+VFGKD A RGWAESF DV S D  GY+AFA DAAPDTNF  MYSQ LNMSPD+LMGTRTARVSE R V 
Subjt:  RTRKGEVATTNHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYVL

Query:  SGSKRKRGGQATDSGDVLRTTIEYGNEQLNRIAE
        SGSKRKR G   DSGD++RT IEYGNEQLNRIAE
Subjt:  SGSKRKRGGQATDSGDVLRTTIEYGNEQLNRIAE

A0A5D3BRF0 Retrotransposon protein2.1e-6298.39Show/hide
Query:  NHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYVLSGSKRKRGGQ
        NHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGW ESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYV SGSKRKRGGQ
Subjt:  NHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYVLSGSKRKRGGQ

Query:  ATDSGDVLRTTIEYGNEQLNRIAE
        ATDSGDVLRTTIEYGNEQLNRIAE
Subjt:  ATDSGDVLRTTIEYGNEQLNRIAE

A0A5D3BRF0 Retrotransposon protein1.3e-0894.12Show/hide
Query:  QNCLGALDGTYIKVNIPASDRARYRTRKGEVATT
        +NCLGALDGTYIKVNIPASDRARYRT KGEVATT
Subjt:  QNCLGALDGTYIKVNIPASDRARYRTRKGEVATT

A0A5D3BRF0 Retrotransposon protein4.3e-4779.84Show/hide
Query:  NHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYVLSGSKRKRGGQ
        +HPTAKGLLNKSF HY++LSYVFGKDRA  G AESF D+  ND  GYE FA+DA PDT+FQ MYSQGLNMSPDELMG R A+VSEGRYV SGSKRKR GQ
Subjt:  NHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRYVLSGSKRKRGGQ

Query:  ATDSGDVLRTTIEYGNEQLNRIAE
        ATDSGDVLRT IEYGNEQLN IAE
Subjt:  ATDSGDVLRTTIEYGNEQLNRIAE

A0A5D3E474 Retrotransposon protein2.9e-4366.43Show/hide
Query:  SDRARYRTRKGEVATTNHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVS
        +D     + K +  T  HP AKGLLNKSF +Y++LSYVFGKD A  GWAE+F D+ SN   GY+AF  DA PDTNF  MYS GLNMSPD+LM TRTARVS
Subjt:  SDRARYRTRKGEVATTNHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVS

Query:  EGRYVLSGSKRKRGGQATDSGDVLRTTIEYGNEQLNRIAE
        E R V SGSKRKR G ATDSGD++RT IEYGNEQL+RIAE
Subjt:  EGRYVLSGSKRKRGGQATDSGDVLRTTIEYGNEQLNRIAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACGACGTTAGTTTCTTCTCAATAATTTTTAGTTATGCATTGCAGAATTGCCTAGGTGCATTAGATGGAACATATATAAAAGTCAACATTCCAGCAAGTGACCGAGCTAG
GTATAGAACACGCAAGGGGGAAGTGGCTACAACTAATCATCCGACGGCCAAGGGCCTCCTTAATAAGTCGTTTTCCCACTATAACAAACTGTCGTACGTGTTTGGCAAAG
ATCGTGCAATGAGAGGTTGGGCCGAGAGTTTTATGGACGTTACGTCAAATGATCTTATTGGGTACGAGGCATTTGCCATTGACGCTGCACCAGATACGAACTTCCAACTT
ATGTACAGTCAAGGATTGAACATGTCGCCTGATGAATTGATGGGAACAAGAACCGCTCGGGTAAGTGAAGGTAGGTATGTTTTGAGCGGGTCTAAGCGAAAACGTGGAGG
ACAGGCTACAGACAGTGGGGACGTGCTTCGCACTACGATTGAGTATGGAAATGAACAACTGAATCGCATTGCTGAATGA
mRNA sequenceShow/hide mRNA sequence
CAACGACGTTAGTTTCTTCTCAATAATTTTTAGTTATGCATTGCAGAATTGCCTAGGTGCATTAGATGGAACATATATAAAAGTCAACATTCCAGCAAGTGACCGAGCTA
GGTATAGAACACGCAAGGGGGAAGTGGCTACAACTAATCATCCGACGGCCAAGGGCCTCCTTAATAAGTCGTTTTCCCACTATAACAAACTGTCGTACGTGTTTGGCAAA
GATCGTGCAATGAGAGGTTGGGCCGAGAGTTTTATGGACGTTACGTCAAATGATCTTATTGGGTACGAGGCATTTGCCATTGACGCTGCACCAGATACGAACTTCCAACT
TATGTACAGTCAAGGATTGAACATGTCGCCTGATGAATTGATGGGAACAAGAACCGCTCGGGTAAGTGAAGGTAGGTATGTTTTGAGCGGGTCTAAGCGAAAACGTGGAG
GACAGGCTACAGACAGTGGGGACGTGCTTCGCACTACGATTGAGTATGGAAATGAACAACTGAATCGCATTGCTGAATGACCTGTCCTACAACGTCAAGACTTAAGCCAA
ACACGTCAAGAGGTTGTCCGACAGTTGGAGGTCATTCCTGAGCTGACATTTATGGATAGGCGTCACTTAATACGTATACTTATGCGTAATGTTGATGACATGAAAGCTTT
CCTTGAGGTTTCTGACAATATGAAGTACCCGTACTGCAGCATCATTGTTCAAGAAAACCGTTAACTAGTTTGTTTGTTGTATTTGTATTAGTGGCTTTTCTTACTTCGAC
TATATGTTCTTCTTCTTACTTGTTTTGTCTTATTATCTAATGAACTTCTCTTTCTGTTCAAGCTTTGTGGTTTGTATTTTCATTTTGCTTTCCAATATAATGGTTTGATA
TTGTTGTATTATCGTATTAATTTACTGTTTTCGTTCAA
Protein sequenceShow/hide protein sequence
NDVSFFSIIFSYALQNCLGALDGTYIKVNIPASDRARYRTRKGEVATTNHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWAESFMDVTSNDLIGYEAFAIDAAPDTNFQL
MYSQGLNMSPDELMGTRTARVSEGRYVLSGSKRKRGGQATDSGDVLRTTIEYGNEQLNRIAE