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MELO3C030133 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C030133
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr03:10497933..10507764
RNA-Seq ExpressionMELO3C030133
SyntenyMELO3C030133
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035073.1 uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa]3.2e-0774.51Show/hide
Query:  IDCLSLLKLRYRLPVSLGLLVKLVNF-----AVKKSIVRRLHAIFRSKQAG
        +DCLSL KL YRLPVSLGLLVK VNF      V+KS+VRRLHAIFRSK AG
Subjt:  IDCLSLLKLRYRLPVSLGLLVKLVNF-----AVKKSIVRRLHAIFRSKQAG

KAA0037607.1 uncharacterized protein E6C27_scaffold277G002620 [Cucumis melo var. makuwa]3.8e-0847.41Show/hide
Query:  MTEILSLRLEITMCTL-RLSLRCLIDCLSLLKLRYRLPVSLGLLVKLVNF----------------------------------------------AVKK
        MTEILSLRLEIT+ TL  +   CLIDCLSL KL YRLPVSLGLLVK VNF                                               V+K
Subjt:  MTEILSLRLEITMCTL-RLSLRCLIDCLSLLKLRYRLPVSLGLLVKLVNF----------------------------------------------AVKK

Query:  SIVRRLHAIFRSKQAG
        S+VRRLHAIFRSK AG
Subjt:  SIVRRLHAIFRSKQAG

KAA0056695.1 hypothetical protein E6C27_scaffold73G00230 [Cucumis melo var. makuwa]3.9e-0557.32Show/hide
Query:  MTEILSLRLEITMCTLRLSLRCLID--------CLSLLKLRYRL-----PVSLGLLVKLVNFAVKKSIVRRLHAIFRSKQAG
        MTEILSLRLEIT+CTL L    + D         LS+    + L      VSLGLLVK VNF V+KS+VRRLHAIFRSK AG
Subjt:  MTEILSLRLEITMCTLRLSLRCLID--------CLSLLKLRYRL-----PVSLGLLVKLVNFAVKKSIVRRLHAIFRSKQAG

KAA0067716.1 gag/pol protein [Cucumis melo var. makuwa]9.7e-0483.87Show/hide
Query:  GWTLNQLFNSGSVGLKEQDVISGVKRSTQNL
        GWTLNQLFNSGSVGLKEQDVISG K S + L
Subjt:  GWTLNQLFNSGSVGLKEQDVISGVKRSTQNL

TYK02180.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-0660.38Show/hide
Query:  LNPSLEQGAPPLIDLRGIQFIDWTLNQLFNSGSVRLKEQDVVLKAELFLSSTN
        +NPSLEQG  P    RGI+FI WTL+QLFN+GSV LKEQDVV      L+  N
Subjt:  LNPSLEQGAPPLIDLRGIQFIDWTLNQLFNSGSVRLKEQDVVLKAELFLSSTN

TrEMBL top hitse value%identityAlignment
A0A5A7SX02 CCHC-type domain-containing protein1.6e-0774.51Show/hide
Query:  IDCLSLLKLRYRLPVSLGLLVKLVNF-----AVKKSIVRRLHAIFRSKQAG
        +DCLSL KL YRLPVSLGLLVK VNF      V+KS+VRRLHAIFRSK AG
Subjt:  IDCLSLLKLRYRLPVSLGLLVKLVNF-----AVKKSIVRRLHAIFRSKQAG

A0A5A7T7T0 Retrotrans_gag domain-containing protein1.8e-0847.41Show/hide
Query:  MTEILSLRLEITMCTL-RLSLRCLIDCLSLLKLRYRLPVSLGLLVKLVNF----------------------------------------------AVKK
        MTEILSLRLEIT+ TL  +   CLIDCLSL KL YRLPVSLGLLVK VNF                                               V+K
Subjt:  MTEILSLRLEITMCTL-RLSLRCLIDCLSLLKLRYRLPVSLGLLVKLVNF----------------------------------------------AVKK

Query:  SIVRRLHAIFRSKQAG
        S+VRRLHAIFRSK AG
Subjt:  SIVRRLHAIFRSKQAG

A0A5A7UT45 Uncharacterized protein1.9e-0557.32Show/hide
Query:  MTEILSLRLEITMCTLRLSLRCLID--------CLSLLKLRYRL-----PVSLGLLVKLVNFAVKKSIVRRLHAIFRSKQAG
        MTEILSLRLEIT+CTL L    + D         LS+    + L      VSLGLLVK VNF V+KS+VRRLHAIFRSK AG
Subjt:  MTEILSLRLEITMCTLRLSLRCLID--------CLSLLKLRYRL-----PVSLGLLVKLVNFAVKKSIVRRLHAIFRSKQAG

A0A5A7VMF5 Gag/pol protein4.7e-0483.87Show/hide
Query:  GWTLNQLFNSGSVGLKEQDVISGVKRSTQNL
        GWTLNQLFNSGSVGLKEQDVISG K S + L
Subjt:  GWTLNQLFNSGSVGLKEQDVISGVKRSTQNL

A0A5D3BSU1 Ty3-gypsy retrotransposon protein1.0e-0660.38Show/hide
Query:  LNPSLEQGAPPLIDLRGIQFIDWTLNQLFNSGSVRLKEQDVVLKAELFLSSTN
        +NPSLEQG  P    RGI+FI WTL+QLFN+GSV LKEQDVV      L+  N
Subjt:  LNPSLEQGAPPLIDLRGIQFIDWTLNQLFNSGSVRLKEQDVVLKAELFLSSTN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATCTTGAGCTTGAGGCTAGAGATTACCATGTGCACACTGAGATTGAGTTTGCGGTGCCTGATAGACTGCCTTAGTCTGCTGAAGCTCCGTTATCGATTGCC
AGTGTCTTTAGGTTTACTAGTGAAATTAGTTAATTTCGCGGTAAAGAAAAGCATTGTTCGTCGGCTTCATGCCATCTTTCGGTCTAAGCAAGCAGGTTGGACCTTAAACC
AATTGTTCAATAGTGGATCAGTGGGTCTTAAGGAGCAAGATGTAATCTCAGGGGTAAAACGGTCGACACAAAATTTGTGGAAGTTTTATAATTCAGGACTGAATCCAAGT
CTTGAACAAGGGGCCCCACCTCTCATTGACCTGAGAGGGATTCAGTTTATAGATTGGACCTTAAACCAATTGTTCAATAGTGGATCAGTGAGACTTAAGGAGCAAGATGT
AGTCTTAAAGGCAGAATTGTTTCTCTCTTCAACTAATAGGCTAACATGGCACATCTCTGCAGGCATTGTATTCTTGCAATCTGGTTTTGTTGATGGCTTGGAGAGGGAAA
TAACACAAAGGTTTGGTGTTATTCTATCAGTCACTTGTGATAATGGGTTGGAACATACATGTGGATTGCTAAGTAAACTCATTAAATCGATTCTGTTTTTCATAATCAGA
AATTTAGGGCCAAGTGGTGCTAATGCATCAGATGGAAAAGATCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGATCCGTTTACAAAAGCTCTTACGACTAAAGTGTTTGAGAGCCACCTACATGGTTTAGGTCTACGTGAAGAGAAGGAGAACTCAAGCAAAGTGTACCCATGGTT
GAATCTTGGTTCATTCTGCACATCACTGGTGCTTTTTGATAAAGAAAACAGGGTAGTTGGTTTTCATGCGAAATCAGAAGGGACAGATTTACCTGAGTTTATTCATAGGG
AATCAGATTTATATGTCATCAGAATGTTTAGAGTTCTAATACTCGGTTGGGTTGTTGGCAGGCCGAGAGGAATTAAACCGAGCTTACAGACCAAGGATCTAGCCCAAGAC
GAACTACAGTTTTCCACGAAAAAGCTGAGCAAAGTTCAAGCTTTGTGTAAAATTTATAAGCAGGATTTATGAAATTTTCATTAGCTACATGACTGAGATCTTGAGCTTGA
GGCTAGAGATTACCATGTGCACACTGAGATTGAGTTTGCGGTGCCTGATAGACTGCCTTAGTCTGCTGAAGCTCCGTTATCGATTGCCAGTGTCTTTAGGTTTACTAGTG
AAATTAGTTAATTTCGCGGTAAAGAAAAGCATTGTTCGTCGGCTTCATGCCATCTTTCGGTCTAAGCAAGCAGGTTGGACCTTAAACCAATTGTTCAATAGTGGATCAGT
GGGTCTTAAGGAGCAAGATGTAATCTCAGGGGTAAAACGGTCGACACAAAATTTGTGGAAGTTTTATAATTCAGGACTGAATCCAAGTCTTGAACAAGGGGCCCCACCTC
TCATTGACCTGAGAGGGATTCAGTTTATAGATTGGACCTTAAACCAATTGTTCAATAGTGGATCAGTGAGACTTAAGGAGCAAGATGTAGTCTTAAAGGCAGAATTGTTT
CTCTCTTCAACTAATAGGCTAACATGGCACATCTCTGCAGGCATTGTATTCTTGCAATCTGGTTTTGTTGATGGCTTGGAGAGGGAAATAACACAAAGGTTTGGTGTTAT
TCTATCAGTCACTTGTGATAATGGGTTGGAACATACATGTGGATTGCTAAGTAAACTCATTAAATCGATTCTGTTTTTCATAATCAGAAATTTAGGGCCAAGTGGTGCTA
ATGCATCAGATGGAAAAGATCTTTAG
Protein sequenceShow/hide protein sequence
MTEILSLRLEITMCTLRLSLRCLIDCLSLLKLRYRLPVSLGLLVKLVNFAVKKSIVRRLHAIFRSKQAGWTLNQLFNSGSVGLKEQDVISGVKRSTQNLWKFYNSGLNPS
LEQGAPPLIDLRGIQFIDWTLNQLFNSGSVRLKEQDVVLKAELFLSSTNRLTWHISAGIVFLQSGFVDGLEREITQRFGVILSVTCDNGLEHTCGLLSKLIKSILFFIIR
NLGPSGANASDGKDL