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MELO3C030165 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C030165
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr03:13199493..13219033
RNA-Seq ExpressionMELO3C030165
SyntenyMELO3C030165
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039148.1 pol protein [Cucumis melo var. makuwa]5.9e-0646.67Show/hide
Query:  RRLHCKLSRASLLSQAEPRALDSCAKPSRA--------------------------------------VRTLLLGKHTCLAVRTRQVNLQ
        RRLHCKLSRASLLSQAEP A  SCA+ SR                                       + T LLGKH CLAVRTRQVNLQ
Subjt:  RRLHCKLSRASLLSQAEPRALDSCAKPSRA--------------------------------------VRTLLLGKHTCLAVRTRQVNLQ
KAA0048134.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.0e-0543.75Show/hide
Query:  RRLHCKLSRASLLSQAEPRALDSCAKPSRA--------------------------------------------VRTLLLGKHTCLAVRTRQVNLQ
        R L+CKLSRAS LSQAEP A +SCA+PSRA                                            + T LLGKHTCLAVRTRQVNLQ
Subjt:  RRLHCKLSRASLLSQAEPRALDSCAKPSRA--------------------------------------------VRTLLLGKHTCLAVRTRQVNLQ
TrEMBL top hitse value%identityAlignment
A0A5A7T8E0 Pol protein2.9e-0646.67Show/hide
Query:  RRLHCKLSRASLLSQAEPRALDSCAKPSRA--------------------------------------VRTLLLGKHTCLAVRTRQVNLQ
        RRLHCKLSRASLLSQAEP A  SCA+ SR                                       + T LLGKH CLAVRTRQVNLQ
Subjt:  RRLHCKLSRASLLSQAEPRALDSCAKPSRA--------------------------------------VRTLLLGKHTCLAVRTRQVNLQ
A0A5A7TYM4 Ty3-gypsy retrotransposon protein4.9e-0643.75Show/hide
Query:  RRLHCKLSRASLLSQAEPRALDSCAKPSRA--------------------------------------------VRTLLLGKHTCLAVRTRQVNLQ
        R L+CKLSRAS LSQAEP A +SCA+PSRA                                            + T LLGKHTCLAVRTRQVNLQ
Subjt:  RRLHCKLSRASLLSQAEPRALDSCAKPSRA--------------------------------------------VRTLLLGKHTCLAVRTRQVNLQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGTCGCGGCGCGCCGCCTGCACTGCAAGCTGAGCCGCGCCTCCCTTCTGTCGCAAGCCGAGCCGCGCGCGCTCGATTCCTGCGCCAAGCCGAGCCGAGCTGTTAG
GACCTTGTTGCTTGGAAAGCACACTTGTCTCGCGGTTAGAACTCGCCAAGTAAATCTCCAGGTAGAGGACGAGCTAAGGGACACGTGTAACCTTTTTAAACAGTCAAGGC
ATTCATGTACGTGGCGCACTTTTACGCGGGTTGTATCTCAAACTCACACCATATCGCAAGGGTTGTTGAAGGGTTCTCCACACCCAAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGTCGCGGCGCGCCGCCTGCACTGCAAGCTGAGCCGCGCCTCCCTTCTGTCGCAAGCCGAGCCGCGCGCGCTCGATTCCTGCGCCAAGCCGAGCCGAGCTGTTAG
GACCTTGTTGCTTGGAAAGCACACTTGTCTCGCGGTTAGAACTCGCCAAGTAAATCTCCAGGTAGAGGACGAGCTAAGGGACACGTGTAACCTTTTTAAACAGTCAAGGC
ATTCATGTACGTGGCGCACTTTTACGCGGGTTGTATCTCAAACTCACACCATATCGCAAGGGTTGTTGAAGGGTTCTCCACACCCAAGATAATTGAAGTCATATCGGGTG
AAAGCTAA
Protein sequenceShow/hide protein sequence
MQVAARRLHCKLSRASLLSQAEPRALDSCAKPSRAVRTLLLGKHTCLAVRTRQVNLQVEDELRDTCNLFKQSRHSCTWRTFTRVVSQTHTISQGLLKGSPHPR