; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C030189 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C030189
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr03:15432038..15433014
RNA-Seq ExpressionMELO3C030189
SyntenyMELO3C030189
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047154.1 retrotransposon protein [Cucumis melo var. makuwa]9.9e-12496.07Show/hide
Query:  YSIMSTSNHASRHVWTKEEQDTLVECLMELVSIGDGNWIMILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEEL
        Y +MSTSNHASRHVWTKEEQDTLVECLMELVSIGDGNWIM       AIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEEL
Subjt:  YSIMSTSNHASRHVWTKEEQDTLVECLMELVSIGDGNWIMILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEEL

Query:  TYVFGCDRATSRFVETLVDAGSNEPGEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLR
        TYVFGCDRATSRFVETLVDAGSNEPGEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLR
Subjt:  TYVFGCDRATSRFVETLVDAGSNEPGEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLR

Query:  MIAEWPARALANDNHVRRNSSAYCVRCQN
        MIAEWPARALANDNHVRRNSSAYCVRCQN
Subjt:  MIAEWPARALANDNHVRRNSSAYCVRCQN

KAA0055631.1 retrotransposon protein [Cucumis melo var. makuwa]3.9e-8874.45Show/hide
Query:  MSTSNHASRHVWTKEEQDTLVECLMELVSIG----DGNWIMILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEE
        MSTSN A RHVWTKEE+ TLVECLM+LVS+G    D   I  LKRTFQAIAEM GP C GFGWNDEE CIIA+K LFDNWVR HPA K LLNK FPYY+E
Subjt:  MSTSNHASRHVWTKEEQDTLVECLMELVSIG----DGNWIMILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEE

Query:  LTYVFGCDRATSRFVETLVDAGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQ
        LTYVFG DR T RF ET  D GSNEP G YD FDMGDGNE+F  VYSQGI LSQDDVRASRPSRASEGRTGSSGSKRKRGS+R+ ++E IHL LDQTN+Q
Subjt:  LTYVFGCDRATSRFVETLVDAGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQ

Query:  LRMIAEWPARALANDNHVRRNSSAYCV
        LR IA+WPAR LANDNHVR  +  +C+
Subjt:  LRMIAEWPARALANDNHVRRNSSAYCV

KAA0062964.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-8668Show/hide
Query:  MSTSNHASRHVWTKEEQDTLVECLMELVSIG-----DGNW------------------------------IMILKRTFQAIAEMWGPTCGGFGWNDEENC
        MSTSN A RHVWT+EE+ TLVECLMELVS+G     +G +                              I  LKRTFQAIAEM GP C GFGWNDEE C
Subjt:  MSTSNHASRHVWTKEEQDTLVECLMELVSIG-----DGNW------------------------------IMILKRTFQAIAEMWGPTCGGFGWNDEENC

Query:  IIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGR
        I+A+K LFDNWVR HPA K LLNK FPYY+ELTYVFGCDRAT RF ET  D GSNEP G YD FDMGDGNE+F SVYSQG+ +SQDDVRASRPSRASEGR
Subjt:  IIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGR

Query:  TGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVR
        TGSSGSKRKRGS+R+ ++E IHLALDQTN+QLR IAEWPAR LANDNHVR
Subjt:  TGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVR

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]3.7e-8668.8Show/hide
Query:  MSTSNHASRHVWTKEEQDTLVECLMELVSIG-----DGNW------------------------------IMILKRTFQAIAEMWGPTCGGFGWNDEENC
        MSTSN ASRHVWT+EE+ TLVECLMELVS+G     +G +                              I  LKRTFQAIAEM GP C GFGWNDEE C
Subjt:  MSTSNHASRHVWTKEEQDTLVECLMELVSIG-----DGNW------------------------------IMILKRTFQAIAEMWGPTCGGFGWNDEENC

Query:  IIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGR
        IIA+K LFDNWVR HPA K LLNK FPYY+ELTYVFG DRAT RF ET  D GSNEP G YD FDMGDGNE+F  VYSQG+ +SQDDVRASRPSRASEGR
Subjt:  IIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGR

Query:  TGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVR
        TGSSGSKRKRGS+R+ DVE IHLALDQTN+QLR IAEWPAR LANDNHVR
Subjt:  TGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVR

KAA0067583.1 retrotransposon protein [Cucumis melo var. makuwa]2.7e-8966.79Show/hide
Query:  MSTSNHASRHVWTKEEQDTLVECLMELVSIG-----DGNW------------------------------IMILKRTFQAIAEMWGPTCGGFGWNDEENC
        MSTSN A RHVWT+EE+ T+VECLMELVS+G     +G +                              I  LKRTFQAIAEM GP C GFGWNDEE C
Subjt:  MSTSNHASRHVWTKEEQDTLVECLMELVSIG-----DGNW------------------------------IMILKRTFQAIAEMWGPTCGGFGWNDEENC

Query:  IIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGR
        I+A+K LFDNWVR HPA KELLNK F YY+ELTYVFG DRAT RF ET  D GSNEP G YD FDMGDGNE+F  VYSQG+ +SQDDVRASRPSRASEGR
Subjt:  IIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGR

Query:  TGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRRNSSAYCVRCQN
        TGSSGSKRKRGS+R+ DVE I+L LDQTN+QLR IAEWPAR LANDNH  RN S YCVRCQN
Subjt:  TGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRRNSSAYCVRCQN

TrEMBL top hitse value%identityAlignment
A0A5A7UQ11 Retrotransposon protein1.9e-8874.45Show/hide
Query:  MSTSNHASRHVWTKEEQDTLVECLMELVSIG----DGNWIMILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEE
        MSTSN A RHVWTKEE+ TLVECLM+LVS+G    D   I  LKRTFQAIAEM GP C GFGWNDEE CIIA+K LFDNWVR HPA K LLNK FPYY+E
Subjt:  MSTSNHASRHVWTKEEQDTLVECLMELVSIG----DGNWIMILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEE

Query:  LTYVFGCDRATSRFVETLVDAGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQ
        LTYVFG DR T RF ET  D GSNEP G YD FDMGDGNE+F  VYSQGI LSQDDVRASRPSRASEGRTGSSGSKRKRGS+R+ ++E IHL LDQTN+Q
Subjt:  LTYVFGCDRATSRFVETLVDAGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQ

Query:  LRMIAEWPARALANDNHVRRNSSAYCV
        LR IA+WPAR LANDNHVR  +  +C+
Subjt:  LRMIAEWPARALANDNHVRRNSSAYCV

A0A5A7V6W3 Retrotransposon protein6.1e-8768Show/hide
Query:  MSTSNHASRHVWTKEEQDTLVECLMELVSIG-----DGNW------------------------------IMILKRTFQAIAEMWGPTCGGFGWNDEENC
        MSTSN A RHVWT+EE+ TLVECLMELVS+G     +G +                              I  LKRTFQAIAEM GP C GFGWNDEE C
Subjt:  MSTSNHASRHVWTKEEQDTLVECLMELVSIG-----DGNW------------------------------IMILKRTFQAIAEMWGPTCGGFGWNDEENC

Query:  IIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGR
        I+A+K LFDNWVR HPA K LLNK FPYY+ELTYVFGCDRAT RF ET  D GSNEP G YD FDMGDGNE+F SVYSQG+ +SQDDVRASRPSRASEGR
Subjt:  IIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGR

Query:  TGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVR
        TGSSGSKRKRGS+R+ ++E IHLALDQTN+QLR IAEWPAR LANDNHVR
Subjt:  TGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVR

A0A5A7VES2 Retrotransposon protein1.8e-8668.8Show/hide
Query:  MSTSNHASRHVWTKEEQDTLVECLMELVSIG-----DGNW------------------------------IMILKRTFQAIAEMWGPTCGGFGWNDEENC
        MSTSN ASRHVWT+EE+ TLVECLMELVS+G     +G +                              I  LKRTFQAIAEM GP C GFGWNDEE C
Subjt:  MSTSNHASRHVWTKEEQDTLVECLMELVSIG-----DGNW------------------------------IMILKRTFQAIAEMWGPTCGGFGWNDEENC

Query:  IIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGR
        IIA+K LFDNWVR HPA K LLNK FPYY+ELTYVFG DRAT RF ET  D GSNEP G YD FDMGDGNE+F  VYSQG+ +SQDDVRASRPSRASEGR
Subjt:  IIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGR

Query:  TGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVR
        TGSSGSKRKRGS+R+ DVE IHLALDQTN+QLR IAEWPAR LANDNHVR
Subjt:  TGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVR

A0A5A7VHM3 Retrotransposon protein1.3e-8966.79Show/hide
Query:  MSTSNHASRHVWTKEEQDTLVECLMELVSIG-----DGNW------------------------------IMILKRTFQAIAEMWGPTCGGFGWNDEENC
        MSTSN A RHVWT+EE+ T+VECLMELVS+G     +G +                              I  LKRTFQAIAEM GP C GFGWNDEE C
Subjt:  MSTSNHASRHVWTKEEQDTLVECLMELVSIG-----DGNW------------------------------IMILKRTFQAIAEMWGPTCGGFGWNDEENC

Query:  IIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGR
        I+A+K LFDNWVR HPA KELLNK F YY+ELTYVFG DRAT RF ET  D GSNEP G YD FDMGDGNE+F  VYSQG+ +SQDDVRASRPSRASEGR
Subjt:  IIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGR

Query:  TGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRRNSSAYCVRCQN
        TGSSGSKRKRGS+R+ DVE I+L LDQTN+QLR IAEWPAR LANDNH  RN S YCVRCQN
Subjt:  TGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRRNSSAYCVRCQN

A0A5D3BQ18 Retrotransposon protein4.8e-12496.07Show/hide
Query:  YSIMSTSNHASRHVWTKEEQDTLVECLMELVSIGDGNWIMILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEEL
        Y +MSTSNHASRHVWTKEEQDTLVECLMELVSIGDGNWIM       AIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEEL
Subjt:  YSIMSTSNHASRHVWTKEEQDTLVECLMELVSIGDGNWIMILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEEL

Query:  TYVFGCDRATSRFVETLVDAGSNEPGEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLR
        TYVFGCDRATSRFVETLVDAGSNEPGEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLR
Subjt:  TYVFGCDRATSRFVETLVDAGSNEPGEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLR

Query:  MIAEWPARALANDNHVRRNSSAYCVRCQN
        MIAEWPARALANDNHVRRNSSAYCVRCQN
Subjt:  MIAEWPARALANDNHVRRNSSAYCVRCQN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACGCGTGCCTTTTGTTTATGACTCTTAAATGTGAAATTGTGAAATTACTAACGTACTCCATTATGTCAACCTCGAACCATGCCTCGAGACATGTATGGACG
AAGGAGGAGCAGGACACTCTTGTGGAGTGTTTAATGGAGTTGGTGTCAATAGGGGATGGAAATTGGATAATGATACTGAAGCGGACATTCCAGGCCATTGCCGAA
ATGTGGGGGCCAACGTGCGGTGGCTTTGGGTGGAACGATGAAGAGAACTGTATCATTGCGAAGAAAGGATTATTTGATAATTGGGTTAGGTTGCATCCTGCAACG
AAAGAACTCCTGAACAAACTGTTTCCGTATTACGAAGAACTTACATATGTGTTCGGTTGCGATAGGGCGACGAGTCGGTTCGTTGAGACATTGGTCGACGCGGGC
TCTAACGAGCCTGGCGAGTATGATGGATTTGATATGGGGGATGGAAACGAGGAGTTCCTGTCCGTGTACAGCCAGGGGATTTACCTGTCACAGGATGATGTACGT
GCATCACGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCGGCGAGAGGTGGATGTTGAAGGCATACATCTGGCA
CTCGACCAAACAAACGACCAACTCAGGATGATTGCGGAGTGGCCTGCACGCGCCCTTGCCAATGACAACCATGTGCGTAGGAATTCTTCTGCATATTGCGTGAGA
TGCCAGAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGTACGCGTGCCTTTTGTTTATGACTCTTAAATGTGAAATTGTGAAATTACTAACGTACTCCATTATGTCAACCTCGAACCATGCCTCGAGACATGTATGGACG
AAGGAGGAGCAGGACACTCTTGTGGAGTGTTTAATGGAGTTGGTGTCAATAGGGGATGGAAATTGGATAATGATACTGAAGCGGACATTCCAGGCCATTGCCGAA
ATGTGGGGGCCAACGTGCGGTGGCTTTGGGTGGAACGATGAAGAGAACTGTATCATTGCGAAGAAAGGATTATTTGATAATTGGGTTAGGTTGCATCCTGCAACG
AAAGAACTCCTGAACAAACTGTTTCCGTATTACGAAGAACTTACATATGTGTTCGGTTGCGATAGGGCGACGAGTCGGTTCGTTGAGACATTGGTCGACGCGGGC
TCTAACGAGCCTGGCGAGTATGATGGATTTGATATGGGGGATGGAAACGAGGAGTTCCTGTCCGTGTACAGCCAGGGGATTTACCTGTCACAGGATGATGTACGT
GCATCACGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCGGCGAGAGGTGGATGTTGAAGGCATACATCTGGCA
CTCGACCAAACAAACGACCAACTCAGGATGATTGCGGAGTGGCCTGCACGCGCCCTTGCCAATGACAACCATGTGCGTAGGAATTCTTCTGCATATTGCGTGAGA
TGCCAGAACTAA
Protein sequenceShow/hide protein sequence
MYACLLFMTLKCEIVKLLTYSIMSTSNHASRHVWTKEEQDTLVECLMELVSIGDGNWIMILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPAT
KELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEPGEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLA
LDQTNDQLRMIAEWPARALANDNHVRRNSSAYCVRCQN