CuGenDBv2

Gene ID	MELO3C030196
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Genome location	chr08:11675188..11675970
RNA-Seq Expression	MELO3C030196
Synteny	MELO3C030196
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031555.1 retrotransposon protein [Cucumis melo var. makuwa]

1.4e-44

87.76

Show/hide

Query:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE
        MSTS RAPRHVWT+EEE TL+EC MELVSMGGWKSDNGTF+PGYLAQL+ MMAEKLPGC+VRATT+IDCRIKTLKRTFQAIAEMRGPAC GFGWND+E
Subjt:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE

KAA0038975.1 retrotransposon protein [Cucumis melo var. makuwa]

1.4e-44

87.76

Show/hide

Query:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE
        MSTS RAPRHVWT+EEE TL+EC MELVSMGGWKSDNGTF+PGYLAQL+ MMAEKLPGC+VRATT+IDCRIKTLKRTFQAIAEMRGPAC GFGWND+E
Subjt:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE

KAA0046637.1 retrotransposon protein [Cucumis melo var. makuwa]

1.4e-44

87.76

Show/hide

Query:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE
        MSTS RAPRHVWT+EEE TL+EC MELVSMGGWKSDNGTF+PGYLAQL+ MMAEKLPGC+VRATT+IDCRIKTLKRTFQAIAEMRGPAC GFGWND+E
Subjt:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE

KAA0053616.1 retrotransposon protein [Cucumis melo var. makuwa]

1.4e-44

87.76

Show/hide

Query:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE
        MSTS RAPRHVWT+EEE TL+EC MELVSMGGWKSDNGTF+PGYLAQL+ MMAEKLPGC+VRATT+IDCRIKTLKRTFQAIAEMRGPAC GFGWND+E
Subjt:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE

TYJ96194.1 retrotransposon protein [Cucumis melo var. makuwa]

1.4e-44

87.76

Show/hide

Query:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE
        MSTS RAPRHVWT+EEE TL+EC MELVSMGGWKSDNGTF+PGYLAQL+ MMAEKLPGC+VRATT+IDCRIKTLKRTFQAIAEMRGPAC GFGWND+E
Subjt:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TC56 Retrotransposon protein

6.8e-45

87.76

Show/hide

Query:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE
        MSTS RAPRHVWT+EEE TL+EC MELVSMGGWKSDNGTF+PGYLAQL+ MMAEKLPGC+VRATT+IDCRIKTLKRTFQAIAEMRGPAC GFGWND+E
Subjt:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE

A0A5A7TRV1 Retrotransposon protein

6.8e-45

87.76

Show/hide

Query:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE
        MSTS RAPRHVWT+EEE TL+EC MELVSMGGWKSDNGTF+PGYLAQL+ MMAEKLPGC+VRATT+IDCRIKTLKRTFQAIAEMRGPAC GFGWND+E
Subjt:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE

A0A5D3BCN9 Retrotransposon protein

6.8e-45

87.76

Show/hide

Query:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE
        MSTS RAPRHVWT+EEE TL+EC MELVSMGGWKSDNGTF+PGYLAQL+ MMAEKLPGC+VRATT+IDCRIKTLKRTFQAIAEMRGPAC GFGWND+E
Subjt:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE

A0A5D3CWL2 Retrotransposon protein

6.8e-45

87.76

Show/hide

Query:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE
        MSTS RAPRHVWT+EEE TL+EC MELVSMGGWKSDNGTF+PGYLAQL+ MMAEKLPGC+VRATT+IDCRIKTLKRTFQAIAEMRGPAC GFGWND+E
Subjt:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE

A0A5D3DCZ1 Retrotransposon protein

6.8e-45

87.76

Show/hide

Query:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE
        MSTS RAPRHVWT+EEE TL+EC MELVSMGGWKSDNGTF+PGYLAQL+ MMAEKLPGC+VRATT+IDCRIKTLKRTFQAIAEMRGPAC GFGWND+E
Subjt:  MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCAACCTCAACCCGGGCCCCAAGGCATGTTTGGACGAAGGAGGAAGAGAGCACTCTTATGGAGTGTTCAATGGAGTTGGTATCAATGGGGGGATGGAAATCCGATAA
TGGTACATTCCAGCCAGGTTACCTGGCTCAGTTGATACACATGATGGCAGAGAAACTACCTGGATGTCGTGTTCGTGCAACGACTCTAATTGACTGTAGAATAAAGACAC
TGAAGCGGACATTCCAGGCCATCGCCGAAATGCGGGGACCAGCGTGCAGAGGCTTTGGGTGGAACGATAAAGAGAATGCATAA

mRNA sequence

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GTGTCATTTCTTTGTGACTGTTAAATGTGAAACTCTGATATCACTAACGTACTCCATATATTTCTTGTAATTTGTCATTCTTAATATGTCAACCTCAACCCGGGCCCCAA
GGCATGTTTGGACGAAGGAGGAAGAGAGCACTCTTATGGAGTGTTCAATGGAGTTGGTATCAATGGGGGGATGGAAATCCGATAATGGTACATTCCAGCCAGGTTACCTG
GCTCAGTTGATACACATGATGGCAGAGAAACTACCTGGATGTCGTGTTCGTGCAACGACTCTAATTGACTGTAGAATAAAGACACTGAAGCGGACATTCCAGGCCATCGC
CGAAATGCGGGGACCAGCGTGCAGAGGCTTTGGGTGGAACGATAAAGAGAATGCATAATTGCGGAGAAAGAATTATTTGATAATTGGGTTAGGTCACATCCTACAGCGAA
GGGACTCCTGAGCAAACCATTTCCGTATTACGACGAACTTACATATGTATTCGATCGCGATAGGGCGACGGGTCAGTTCGCTGAGACATTCGCCGACATGGGGTTTAACG
AGCCTAGCGGGTATGAGAGATTTGACATAGCGAATGGAAACGAGGAGTTTCCGCCCGTATACAACCAAAGGATTGACATGTCGCAAGACGATGTACGCGCATCACGACCT
TCTCGCGTTTCAGAGGGTAGGACC

Protein sequence

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MSTSTRAPRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTLIDCRIKTLKRTFQAIAEMRGPACRGFGWNDKENA

MELO3C030196 (gene) of Melon (DHL92) v4 genome