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MELO3C030210 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C030210
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Descriptionlysine-specific demethylase JMJ25
Genome locationchr03:16410505..16411363
RNA-Seq ExpressionMELO3C030210
SyntenyMELO3C030210
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0033169 - histone H3-K9 demethylation (biological process)
GO:0000118 - histone deacetylase complex (cellular component)
GO:0000785 - chromatin (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0031490 - chromatin DNA binding (molecular function)
GO:0032454 - histone demethylase activity (H3-K9 specific) (molecular function)
InterPro domainsIPR045109 - Histone demethylase JHDM2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052729.1 lysine-specific demethylase JMJ25 [Cucumis melo var. makuwa]5.8e-2169.05Show/hide
Query:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
        N +D SV   L+       E ++FLGDGVGKIL FHYLI VLLPILKQ+NTEKD E+ET+A VKGIELS+VDIKQDEF SLEHC
Subjt:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
XP_008439919.1 PREDICTED: lysine-specific demethylase JMJ25 [Cucumis melo]5.8e-2169.05Show/hide
Query:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
        N +D SV   L+       E ++FLGDGVGKIL FHYLI VLLPILKQ+NTEKD E+ET+A VKGIELS+VDIKQDEF SLEHC
Subjt:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
XP_022978349.1 lysine-specific demethylase JMJ25 isoform X1 [Cucurbita maxima]1.7e-2069.05Show/hide
Query:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
        N +D SV   L    H   +FQ+FLGDGVGKIL FHYLI VLLPILKQ+N EK  ELET+A VKGIELS+VDIKQ+EF SLEHC
Subjt:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
XP_022978350.1 lysine-specific demethylase JMJ25 isoform X2 [Cucurbita maxima]1.7e-2069.05Show/hide
Query:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
        N +D SV   L    H   +FQ+FLGDGVGKIL FHYLI VLLPILKQ+N EK  ELET+A VKGIELS+VDIKQ+EF SLEHC
Subjt:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
XP_022978354.1 lysine-specific demethylase JMJ25 isoform X5 [Cucurbita maxima]1.7e-2069.05Show/hide
Query:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
        N +D SV   L    H   +FQ+FLGDGVGKIL FHYLI VLLPILKQ+N EK  ELET+A VKGIELS+VDIKQ+EF SLEHC
Subjt:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
TrEMBL top hitse value%identityAlignment
A0A1S3B0M7 lysine-specific demethylase JMJ252.8e-2169.05Show/hide
Query:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
        N +D SV   L+       E ++FLGDGVGKIL FHYLI VLLPILKQ+NTEKD E+ET+A VKGIELS+VDIKQDEF SLEHC
Subjt:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
A0A5A7UGT3 Lysine-specific demethylase JMJ252.8e-2169.05Show/hide
Query:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
        N +D SV   L+       E ++FLGDGVGKIL FHYLI VLLPILKQ+NTEKD E+ET+A VKGIELS+VDIKQDEF SLEHC
Subjt:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
A0A6J1ISV0 lysine-specific demethylase JMJ25 isoform X48.2e-2169.05Show/hide
Query:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
        N +D SV   L    H   +FQ+FLGDGVGKIL FHYLI VLLPILKQ+N EK  ELET+A VKGIELS+VDIKQ+EF SLEHC
Subjt:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
A0A6J1ITU7 lysine-specific demethylase JMJ25 isoform X18.2e-2169.05Show/hide
Query:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
        N +D SV   L    H   +FQ+FLGDGVGKIL FHYLI VLLPILKQ+N EK  ELET+A VKGIELS+VDIKQ+EF SLEHC
Subjt:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
A0A6J1ITV2 lysine-specific demethylase JMJ25 isoform X58.2e-2169.05Show/hide
Query:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
        N +D SV   L    H   +FQ+FLGDGVGKIL FHYLI VLLPILKQ+N EK  ELET+A VKGIELS+VDIKQ+EF SLEHC
Subjt:  NLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTGTTCGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCGGGAGGGGGTGTGACATTGAATTTGAGAGATTTCTCAGTTTTGACAAAGTTGAATGTTGG
TGCTCATCAGATAAATGAATTTCAGAATTTTTTGGGAGATGGCGTTGGAAAAATTCTATGTTTCCATTATTTGATTTATGTTCTTCTCCCTATACTGAAACAAGTAAACA
CAGAGAAGGACACTGAGCTAGAAACAAAGGCCACGGTAAAAGGGATAGAACTTTCTAAAGTTGATATCAAGCAGGATGAATTTCGTAGTCTTGAACATTGTTGGTATGCT
GCTTCATATTTTGGAACATTATTGCTGCCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTTCGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCGGGAGGGGGTGTGACATTGAATTTGAGAGATTTCTCAGTTTTGACAAAGTTGAATGTT
GGTGCTCATCAGATAAATGAATTTCAGAATTTTTTGGGAGATGGCGTTGGAAAAATTCTATGTTTCCATTATTTGATTTATGTTCTTCTCCCTATACTGAAACAAGTAAA
CACAGAGAAGGACACTGAGCTAGAAACAAAGGCCACGGTAAAAGGGATAGAACTTTCTAAAGTTGATATCAAGCAGGATGAATTTCGTAGTCTTGAACATTGTTGGTATG
CTGCTTCATATTTTGGAACATTATTGCTGCCGTAATATTTTTCTTGGGGATTCTAGTGGAGTCTGTAACATGTTCATTCCGAACTTGTTCTGTTTCATTGGTGGTTATTG
AAGGGACTCATATCTTTTCTTTGAATGCTGATTTTTCAAGGTTTCAATGTATTTTCAAGACAAGCATCGACCTTAGCTTATTTAATTTGAAGTTGTCAGAGAAAAAGCTT
CTTTTTGTTGGTGTCTCTCTCTATTCTATTTGCAAATGGCAAGGCGACCGTTGA
Protein sequenceShow/hide protein sequence
VVRRLHAIFRSKVAGSPGGGVTLNLRDFSVLTKLNVGAHQINEFQNFLGDGVGKILCFHYLIYVLLPILKQVNTEKDTELETKATVKGIELSKVDIKQDEFRSLEHCWYA
ASYFGTLLLP