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MELO3C030231 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C030231
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionCACTA en-spm transposon protein
Genome locationchr03:18462016..18464691
RNA-Seq ExpressionMELO3C030231
SyntenyMELO3C030231
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]2.5e-0880Show/hide
Query:  STVIVAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
        S V VA+LPTQYAYHF DK EWGAGN ITQDGIHSF  LG
Subjt:  STVIVAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
KAA0040839.1 uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa]1.5e-0884.21Show/hide
Query:  VIVAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
        V VAKLPTQYAYHF DK +WGAGNIITQD IHSF TLG
Subjt:  VIVAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-0991.67Show/hide
Query:  VAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
        VAKLPTQYAYHFEDK EWGAGNIITQDGIHSF  LG
Subjt:  VAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.1e-0884.21Show/hide
Query:  VIVAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
        V VA+LPTQYAYHF DK EWGAGNIITQDGIHSF  LG
Subjt:  VIVAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]1.9e-0886.11Show/hide
Query:  VAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
        VAK PTQYAYHFEDK EWGAGNIITQDGIH F  LG
Subjt:  VAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class1.2e-0880Show/hide
Query:  STVIVAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
        S V VA+LPTQYAYHF DK EWGAGN ITQDGIHSF  LG
Subjt:  STVIVAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
A0A5A7THR9 Uncharacterized protein7.1e-0984.21Show/hide
Query:  VIVAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
        V VAKLPTQYAYHF DK +WGAGNIITQD IHSF TLG
Subjt:  VIVAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
A0A5A7TKJ4 Gag/pol protein6.5e-1091.67Show/hide
Query:  VAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
        VAKLPTQYAYHFEDK EWGAGNIITQDGIHSF  LG
Subjt:  VAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
A0A5A7VFG5 Ty1-copia retrotransposon protein5.5e-0984.21Show/hide
Query:  VIVAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
        V VA+LPTQYAYHF DK EWGAGNIITQDGIHSF  LG
Subjt:  VIVAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-949.3e-0986.11Show/hide
Query:  VAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
        VAK PTQYAYHFEDK EWGAGNIITQDGIH F  LG
Subjt:  VAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGAACTTCAGTCTCAACCCACCACAGAAGGTTCTCAAGCCTTCTTCGAGGACGAGATATGCGAGACCGTTTTGGATAAACAACCAAGCTACTCAAAAGGTCTTGG
TTCGGACCTAAAGTCTAAGTCCCGAAAGGCTGGTAGCAGTTGTTTATTTTCATATGAAACAACAAAAAACGTCGGTGTTACGTGCCCAACAAATGAAAGAAATGAAGAAG
ATGATCGAGAAAATGAGTTGGGTACAAAGAGGACCTTGAACACTTGGGATCATGAGCTATTGGTGAAGTCAGATATATATGATCAAGACTGTTCTAGTCTTGGGCCTTAT
TATCCGAAGTTGAAAGGGTTAGTATTAGGTCAGTCTCATCTCAGTCTCCCACTCATCGCGCCTCAAGTTCCCTCTCGCCTTAGTCTCCTTTCGATTCTCCCTCTCATCAA
CGTCCATCCCTCTCAACTCTCTATCGCCCTCCGATTCGCCCTCACAGTCGATGACTATCCTCTCTACGACCAGTGCTTTAAGGTTATTTTAATGGGCTATGGAGATTATA
ATGTTGAGAAAATTAAAACGATGGAGGGCAGTAGGGGACAACATAATGAAACTAGCCCTAAAACTGTGAGTTCAAGTAAACCACCACTACCCGATAAGAAGAGAGCTAGA
GCCACTAAGAAGACAACTTCCACTGTGATAGTGGCCAAATTGCCAACTCAATATGCTTATCATTTTGAGGACAAGAACGAGTGGGGAGCTGGGAACATAATCACACAAGA
TGGAATTCACTCCTTCCTAACTTTAGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGGAACTTCAGTCTCAACCCACCACAGAAGGTTCTCAAGCCTTCTTCGAGGACGAGATATGCGAGACCGTTTTGGATAAACAACCAAGCTACTCAAAAGGTCTTGG
TTCGGACCTAAAGTCTAAGTCCCGAAAGGCTGGTAGCAGTTGTTTATTTTCATATGAAACAACAAAAAACGTCGGTGTTACGTGCCCAACAAATGAAAGAAATGAAGAAG
ATGATCGAGAAAATGAGTTGGGTACAAAGAGGACCTTGAACACTTGGGATCATGAGCTATTGGTGAAGTCAGATATATATGATCAAGACTGTTCTAGTCTTGGGCCTTAT
TATCCGAAGTTGAAAGGGTTAGTATTAGGTCAGTCTCATCTCAGTCTCCCACTCATCGCGCCTCAAGTTCCCTCTCGCCTTAGTCTCCTTTCGATTCTCCCTCTCATCAA
CGTCCATCCCTCTCAACTCTCTATCGCCCTCCGATTCGCCCTCACAGTCGATGACTATCCTCTCTACGACCAGTGCTTTAAGGTTATTTTAATGGGCTATGGAGATTATA
ATGTTGAGAAAATTAAAACGATGGAGGGCAGTAGGGGACAACATAATGAAACTAGCCCTAAAACTGTGAGTTCAAGTAAACCACCACTACCCGATAAGAAGAGAGCTAGA
GCCACTAAGAAGACAACTTCCACTGTGATAGTGGCCAAATTGCCAACTCAATATGCTTATCATTTTGAGGACAAGAACGAGTGGGGAGCTGGGAACATAATCACACAAGA
TGGAATTCACTCCTTCCTAACTTTAGGGTAAATAGATAAGT
Protein sequenceShow/hide protein sequence
MLELQSQPTTEGSQAFFEDEICETVLDKQPSYSKGLGSDLKSKSRKAGSSCLFSYETTKNVGVTCPTNERNEEDDRENELGTKRTLNTWDHELLVKSDIYDQDCSSLGPY
YPKLKGLVLGQSHLSLPLIAPQVPSRLSLLSILPLINVHPSQLSIALRFALTVDDYPLYDQCFKVILMGYGDYNVEKIKTMEGSRGQHNETSPKTVSSSKPPLPDKKRAR
ATKKTTSTVIVAKLPTQYAYHFEDKNEWGAGNIITQDGIHSFLTLG