; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C030232 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C030232
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionProtein ROOT HAIR DEFECTIVE 3-like
Genome locationchr03:18627167..18628288
RNA-Seq ExpressionMELO3C030232
SyntenyMELO3C030232
Gene Ontology termsGO:0005783 - endoplasmic reticulum (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR008803 - RHD3/Sey1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054640.1 protein ROOT HAIR DEFECTIVE 3-like [Cucumis melo var. makuwa]1.6e-1072.88Show/hide
Query:  VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVVNLRQRFFHSIALGGLVEVGRRSTVLSK
        VMMRLFSP KTTLMFVIRDKTR        V NLRQRFFHS + GGLVEV RRSTV S+
Subjt:  VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVVNLRQRFFHSIALGGLVEVGRRSTVLSK

OIW09003.1 hypothetical protein TanjilG_05979 [Lupinus angustifolius]9.8e-1370.97Show/hide
Query:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV--------NLRQRFFHSIALGGL
        +LKTVF+VMMRLFSP KTTL+FVIRDKT+ PLENLEPV+        +LRQRF+HSIA GGL
Subjt:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV--------NLRQRFFHSIALGGL

PKI62324.1 hypothetical protein CRG98_017325 [Punica granatum]6.3e-1257.83Show/hide
Query:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV-----------------------------NLRQRFFHSIALGGL
        +LKTVF+VMMRLFSP KTTLMFVIRDKTR PLENLEPV+                             NLRQRFFHSIA GGL
Subjt:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV-----------------------------NLRQRFFHSIALGGL

TYK08622.1 protein ROOT HAIR DEFECTIVE 3-like [Cucumis melo var. makuwa]1.6e-1072.88Show/hide
Query:  VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVVNLRQRFFHSIALGGLVEVGRRSTVLSK
        VMMRLFSP KTTLMFVIRDKTR        V NLRQRFFHS + GGLVEV RRSTV S+
Subjt:  VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVVNLRQRFFHSIALGGLVEVGRRSTVLSK

TYK30626.1 metal transporter Nramp1-like [Cucumis melo var. makuwa]2.8e-1278.57Show/hide
Query:  LKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVVNLRQRFFHSIALGGLVEV
        LKTVF+VMMRLFSPHKTTLMFVIRDKTR+ +        LRQRFFHSIALGGLVEV
Subjt:  LKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVVNLRQRFFHSIALGGLVEV

TrEMBL top hitse value%identityAlignment
A0A2I0K194 GB1/RHD3-type G domain-containing protein3.1e-1257.83Show/hide
Query:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV-----------------------------NLRQRFFHSIALGGL
        +LKTVF+VMMRLFSP KTTLMFVIRDKTR PLENLEPV+                             NLRQRFFHSIA GGL
Subjt:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV-----------------------------NLRQRFFHSIALGGL

A0A4P1RE78 GB1/RHD3-type G domain-containing protein4.7e-1370.97Show/hide
Query:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV--------NLRQRFFHSIALGGL
        +LKTVF+VMMRLFSP KTTL+FVIRDKT+ PLENLEPV+        +LRQRF+HSIA GGL
Subjt:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV--------NLRQRFFHSIALGGL

A0A5A7UH94 Protein ROOT HAIR DEFECTIVE 3-like7.5e-1172.88Show/hide
Query:  VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVVNLRQRFFHSIALGGLVEVGRRSTVLSK
        VMMRLFSP KTTLMFVIRDKTR        V NLRQRFFHS + GGLVEV RRSTV S+
Subjt:  VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVVNLRQRFFHSIALGGLVEVGRRSTVLSK

A0A5D3CBE8 Protein ROOT HAIR DEFECTIVE 3-like7.5e-1172.88Show/hide
Query:  VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVVNLRQRFFHSIALGGLVEVGRRSTVLSK
        VMMRLFSP KTTLMFVIRDKTR        V NLRQRFFHS + GGLVEV RRSTV S+
Subjt:  VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVVNLRQRFFHSIALGGLVEVGRRSTVLSK

A0A5D3E410 Metal transporter Nramp1-like1.4e-1278.57Show/hide
Query:  LKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVVNLRQRFFHSIALGGLVEV
        LKTVF+VMMRLFSPHKTTLMFVIRDKTR+ +        LRQRFFHSIALGGLVEV
Subjt:  LKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVVNLRQRFFHSIALGGLVEV

SwissProt top hitse value%identityAlignment
P93042 Protein ROOT HAIR DEFECTIVE 31.5e-1145.1Show/hide
Query:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV------------------------------------------------NLRQRFFHSIALG
        +LKTVF+VMMRLFSP KTTLMFVIRDKTR PLENLEPV+                                                NLRQRFF S+A G
Subjt:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV------------------------------------------------NLRQRFFHSIALG

Query:  GL
        GL
Subjt:  GL

Q0JLS6 Protein ROOT HAIR DEFECTIVE 38.0e-1076.92Show/hide
Query:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV
        +LKTVF+VMMRLFSP KTTL+FVIRDK++ PLENLEP++
Subjt:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV

Q2QMH2 Protein ROOT HAIR DEFECTIVE 3 homolog 19.5e-1168.63Show/hide
Query:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVVNLR-QRFFHSIA
        +LKTVF+VMMRLFSP KTTL+FVIRDKTR PLE+LEPV+    Q+ ++S+A
Subjt:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVVNLR-QRFFHSIA

Q9FKE9 Protein ROOT HAIR DEFECTIVE 3 homolog 23.4e-0839.22Show/hide
Query:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLE------------------------------------------------PVVNLRQRFFHSIALG
        +LKTVF+VM+RLFSP KTTL+FVIRDKT+ P+E LE                                                 V  LRQRFFHSI+ G
Subjt:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLE------------------------------------------------PVVNLRQRFFHSIALG

Query:  GL
        GL
Subjt:  GL

Q9SSN0 Protein ROOT HAIR DEFECTIVE 3 homolog 11.6e-1082.05Show/hide
Query:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV
        +LKTVF+VMMRLFSP KTT++FVIRDKTR PLENLEPV+
Subjt:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV

Arabidopsis top hitse value%identityAlignment
AT1G72960.1 Root hair defective 3 GTP-binding protein (RHD3)1.1e-1182.05Show/hide
Query:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV
        +LKTVF+VMMRLFSP KTT++FVIRDKTR PLENLEPV+
Subjt:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV

AT3G13870.1 Root hair defective 3 GTP-binding protein (RHD3)1.0e-1245.1Show/hide
Query:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV------------------------------------------------NLRQRFFHSIALG
        +LKTVF+VMMRLFSP KTTLMFVIRDKTR PLENLEPV+                                                NLRQRFF S+A G
Subjt:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV------------------------------------------------NLRQRFFHSIALG

Query:  GL
        GL
Subjt:  GL

AT3G13870.2 Root hair defective 3 GTP-binding protein (RHD3)1.0e-1245.1Show/hide
Query:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV------------------------------------------------NLRQRFFHSIALG
        +LKTVF+VMMRLFSP KTTLMFVIRDKTR PLENLEPV+                                                NLRQRFF S+A G
Subjt:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVV------------------------------------------------NLRQRFFHSIALG

Query:  GL
        GL
Subjt:  GL

AT5G45160.1 Root hair defective 3 GTP-binding protein (RHD3)2.4e-0939.22Show/hide
Query:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLE------------------------------------------------PVVNLRQRFFHSIALG
        +LKTVF+VM+RLFSP KTTL+FVIRDKT+ P+E LE                                                 V  LRQRFFHSI+ G
Subjt:  ILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLE------------------------------------------------PVVNLRQRFFHSIALG

Query:  GL
        GL
Subjt:  GL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTTTCAAATGTTACCTTCGAACAACTCTTTATCTACGATTACATCAAGGCCAGTTGGAAAAGTAGGGGAATTTTGAGAAAAAAAAAAATTAAGGATAAGAGGTT
GTTTTTAAACATATTAAAAACTGTATTTAAGGTCATGATGAGATTGTTCAGTCCACATAAAACAACACTAATGTTTGTCATACGTGATAAAACAAGGATACCATTGGAAA
ATTTAGAGCCTGTTGTAAATTTGAGACAGAGATTCTTCCATTCTATTGCCCTAGGAGGACTGGTTGAGGTTGGAAGAAGAAGTACAGTCCTGTCCAAACAAACTGATTAC
ATTTGTTGCCTTTTCTCCCGACTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCATTTTCAAATGTTACCTTCGAACAACTCTTTATCTACGATTACATCAAGGCCAGTTGGAAAAGTAGGGGAATTTTGAGAAAAAAAAAAATTAAGGATAAGAGGTT
GTTTTTAAACATATTAAAAACTGTATTTAAGGTCATGATGAGATTGTTCAGTCCACATAAAACAACACTAATGTTTGTCATACGTGATAAAACAAGGATACCATTGGAAA
ATTTAGAGCCTGTTGTAAATTTGAGACAGAGATTCTTCCATTCTATTGCCCTAGGAGGACTGGTTGAGGTTGGAAGAAGAAGTACAGTCCTGTCCAAACAAACTGATTAC
ATTTGTTGCCTTTTCTCCCGACTGTAA
Protein sequenceShow/hide protein sequence
MSFSNVTFEQLFIYDYIKASWKSRGILRKKKIKDKRLFLNILKTVFKVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVVNLRQRFFHSIALGGLVEVGRRSTVLSKQTDY
ICCLFSRL