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MELO3C030248 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C030248
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRibosome biogenesis protein BRX1-like protein
Genome locationchr03:20096381..20099307
RNA-Seq ExpressionMELO3C030248
SyntenyMELO3C030248
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0006364 - rRNA processing (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR026532 - Ribosome biogenesis protein BRX1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031641.1 ribosome biogenesis protein BRX1-like protein [Cucumis melo var. makuwa]1.6e-3182.42Show/hide
Query:  GPKQKERISMAKGCSFSKNRCNEFNDFGTNRGPTA---------------NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        GPKQKERISMAKGCSFSKNRCNEFNDFGTNRGPTA               +AMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
Subjt:  GPKQKERISMAKGCSFSKNRCNEFNDFGTNRGPTA---------------NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ

XP_008450669.1 PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo]6.1e-1085.37Show/hide
Query:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        + MEELKL GN+LKGSRPILTFSSNFDKDV WKL+KEMIIQ
Subjt:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ

XP_008456708.1 PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo]1.0e-1297.56Show/hide
Query:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        +AMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
Subjt:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ

XP_008460241.1 PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo]4.1e-2263.64Show/hide
Query:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQN--------------------------SIIGCCFKNYLVKHTMRLREVFNTRKEVIIE
        +A+EELKLIGNYLKGSRPILTFSSNFDKDVLWKL+KEMIIQ                             + CCFKNYLVK T RLREVFNTRKEVIIE
Subjt:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQN--------------------------SIIGCCFKNYLVKHTMRLREVFNTRKEVIIE

XP_011659901.2 ribosome biogenesis protein BRX1 homolog 1 [Cucumis sativus]6.1e-1085.37Show/hide
Query:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        + MEELKL GN+LKGSRPILTFSSNFDKDV WKL+KEMIIQ
Subjt:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ

TrEMBL top hitse value%identityAlignment
A0A1S3BQS3 ribosome biogenesis protein BRX1-like2.9e-1085.37Show/hide
Query:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        + MEELKL GN+LKGSRPILTFSSNFDKDV WKL+KEMIIQ
Subjt:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ

A0A1S3C4K0 ribosome biogenesis protein BRX1 homolog4.8e-1397.56Show/hide
Query:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        +AMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
Subjt:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ

A0A1S3CC56 ribosome biogenesis protein BRX1 homolog2.0e-2263.64Show/hide
Query:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQN--------------------------SIIGCCFKNYLVKHTMRLREVFNTRKEVIIE
        +A+EELKLIGNYLKGSRPILTFSSNFDKDVLWKL+KEMIIQ                             + CCFKNYLVK T RLREVFNTRKEVIIE
Subjt:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQN--------------------------SIIGCCFKNYLVKHTMRLREVFNTRKEVIIE

A0A5A7SQ25 Ribosome biogenesis protein BRX1-like protein7.9e-3282.42Show/hide
Query:  GPKQKERISMAKGCSFSKNRCNEFNDFGTNRGPTA---------------NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        GPKQKERISMAKGCSFSKNRCNEFNDFGTNRGPTA               +AMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
Subjt:  GPKQKERISMAKGCSFSKNRCNEFNDFGTNRGPTA---------------NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ

A0A5D3CG95 Ribosome biogenesis protein BRX1-like2.9e-1085.37Show/hide
Query:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        + MEELKL GN+LKGSRPILTFSSNFDKDV WKL+KEMIIQ
Subjt:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ

SwissProt top hitse value%identityAlignment
Q54JN0 Ribosome biogenesis protein BRX1 homolog3.0e-0443.64Show/hide
Query:  TNRGPT-------ANAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        T  GPT        + ++EL++ GN LKGSRP L F  +FD +V  +L+KE+I Q
Subjt:  TNRGPT-------ANAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ

Q8UVY2 Ribosome biogenesis protein BRX1 homolog3.0e-0448.78Show/hide
Query:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        + + ELK+ GN LKGSRPIL+F   FD++  + L+KE++ Q
Subjt:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ

Q9C928 Ribosome biogenesis protein BRX1 homolog 21.5e-1175.61Show/hide
Query:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        +AMEE+KL GN+LKGSRP+LTFSSNFDKD  WKL+KEM+ Q
Subjt:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ

Q9LE16 Ribosome biogenesis protein BRX1 homolog 12.8e-1070.73Show/hide
Query:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        + MEELKL GN+LKGSRP+LTFSSNF+ D  WKL+KEM+ Q
Subjt:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ

Q9VZE6 Ribosome biogenesis protein BRX1 homolog1.8e-0451.22Show/hide
Query:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        + M ELK+ GN L+GSRP+L+F S FD+    KL+KE+ +Q
Subjt:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ

Arabidopsis top hitse value%identityAlignment
AT1G52930.1 Ribosomal RNA processing Brix domain protein1.1e-1275.61Show/hide
Query:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        +AMEE+KL GN+LKGSRP+LTFSSNFDKD  WKL+KEM+ Q
Subjt:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ

AT3G15460.1 Ribosomal RNA processing Brix domain protein2.0e-1170.73Show/hide
Query:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        + MEELKL GN+LKGSRP+LTFSSNF+ D  WKL+KEM+ Q
Subjt:  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATTGTTGGCATAACTATTGTTGCCAATTCCTCCCCTCATCTTCTGACCGTCGACCAACGTCCTTCAAACAGTCTTATTAGACGAAAACGAAAAGCTACC
GGAATAAATGAGAAGCGGTCGCTTGATGAAAGCGAAAAGGGTGGTCCTAAACAAAAAGAAAGAATTTCAATGGCAAAGGGTTGTTCTTTTTCTAAGAATAGGTGC
AATGAGTTCAATGATTTTGGTACTAATAGAGGACCGACAGCCAATGCAATGGAAGAATTGAAGCTTATAGGGAACTATCTGAAAGGTTCCCGTCCAATTTTGACA
TTTTCATCGAATTTTGATAAAGATGTCCTCTGGAAGCTTATGAAGGAAATGATTATTCAGAATTCTATTATAGGTTGTTGCTTCAAGAATTATTTGGTGAAACAT
ACTATGAGGCTACGTGAAGTATTTAACACTCGTAAAGAAGTAATTATTGAGGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAATTGTTGGCATAACTATTGTTGCCAATTCCTCCCCTCATCTTCTGACCGTCGACCAACGTCCTTCAAACAGTCTTATTAGACGAAAACGAAAAGCTACC
GGAATAAATGAGAAGCGGTCGCTTGATGAAAGCGAAAAGGGTGGTCCTAAACAAAAAGAAAGAATTTCAATGGCAAAGGGTTGTTCTTTTTCTAAGAATAGGTGC
AATGAGTTCAATGATTTTGGTACTAATAGAGGACCGACAGCCAATGCAATGGAAGAATTGAAGCTTATAGGGAACTATCTGAAAGGTTCCCGTCCAATTTTGACA
TTTTCATCGAATTTTGATAAAGATGTCCTCTGGAAGCTTATGAAGGAAATGATTATTCAGAATTCTATTATAGGTTGTTGCTTCAAGAATTATTTGGTGAAACAT
ACTATGAGGCTACGTGAAGTATTTAACACTCGTAAAGAAGTAATTATTGAGGGTTAG
Protein sequenceShow/hide protein sequence
MGIVGITIVANSSPHLLTVDQRPSNSLIRRKRKATGINEKRSLDESEKGGPKQKERISMAKGCSFSKNRCNEFNDFGTNRGPTANAMEELKLIGNYLKGSRPILT
FSSNFDKDVLWKLMKEMIIQNSIIGCCFKNYLVKHTMRLREVFNTRKEVIIEG