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MELO3C030585 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C030585
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptiontRNA pseudouridine synthase
Genome locationchr04:17515919..17516082
RNA-Seq ExpressionMELO3C030585
SyntenyMELO3C030585
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0009982 - pseudouridine synthase activity (molecular function)
InterPro domainsIPR020094 - Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal
IPR020103 - Pseudouridine synthase, catalytic domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3437272.1 hypothetical protein FNV43_RR20025 [Rhamnella rubrinervis]2.1e-0684.38Show/hide
Query:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
        +LKDKCLP+E CVVV GRTDKGVTALQQVC+F
Subjt:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
TYK28521.1 tRNA pseudouridine synthase A [Cucumis melo var. makuwa]3.6e-0684.38Show/hide
Query:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
        MLKDKCLPLE C VV GRTDKGVTAL+QVC+F
Subjt:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
XP_010106935.1 uncharacterized protein LOC21391583 isoform X1 [Morus notabilis]2.1e-0684.38Show/hide
Query:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
        +LKDKCLPLE C VV GRTDKGVTALQQVC+F
Subjt:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
XP_015881667.1 uncharacterized protein LOC107417573 [Ziziphus jujuba]3.6e-0684.38Show/hide
Query:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
        +LKDKCLPLE C VV GRTDKGVTALQQVC+F
Subjt:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
XP_024028370.1 uncharacterized protein LOC21391583 isoform X2 [Morus notabilis]2.1e-0684.38Show/hide
Query:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
        +LKDKCLPLE C VV GRTDKGVTALQQVC+F
Subjt:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
TrEMBL top hitse value%identityAlignment
A0A5A7UXE7 tRNA pseudouridine synthase1.8e-0684.38Show/hide
Query:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
        MLKDKCLPLE C VV GRTDKGVTAL+QVC+F
Subjt:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
A0A5D3DY63 tRNA pseudouridine synthase A1.8e-0684.38Show/hide
Query:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
        MLKDKCLPLE C VV GRTDKGVTAL+QVC+F
Subjt:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
A0A6P3ZQW7 tRNA pseudouridine synthase1.8e-0684.38Show/hide
Query:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
        +LKDKCLPLE C VV GRTDKGVTALQQVC+F
Subjt:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
A0A6P4A7G1 tRNA pseudouridine synthase1.8e-0684.38Show/hide
Query:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
        +LKDKCLPLE C VV GRTDKGVTALQQVC+F
Subjt:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
W9S3H9 tRNA pseudouridine synthase1.0e-0684.38Show/hide
Query:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
        +LKDKCLPLE C VV GRTDKGVTALQQVC+F
Subjt:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G35400.1 Pseudouridine synthase family protein1.7e-0668.75Show/hide
Query:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
        +LK KC PLE  V+V GRTDKGV+AL QVC+F
Subjt:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
AT5G35400.2 Pseudouridine synthase family protein1.7e-0668.75Show/hide
Query:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF
        +LK KC PLE  V+V GRTDKGV+AL QVC+F
Subjt:  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAAAGATAAATGCTTACCATTAGAAGAATGTGTTGTGGTTGTTGGGCGCACTGACAAAGGGGTGACAGCTCTACAACAAGTTTGCACATTTTGTATGTTAGCTTC
CTAA
mRNA sequenceShow/hide mRNA sequence
GATTGTAAGAAATATCTATTGGGAAGTTTGTAGATGAGACGAAAGCTCAAATGCTGAAAGATAAATGCTTACCATTAGAAGAATGTGTTGTGGTTGTTGGGCGCACTGAC
AAAGGGGTGACAGCTCTACAACAAGTTTGCACATTTTGTATGTTAGCTTCCTAA
Protein sequenceShow/hide protein sequence
MLKDKCLPLEECVVVVGRTDKGVTALQQVCTFCMLAS