CuGenDBv2

Gene ID	MELO3C030596
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	U4/U6 small nuclear ribonucleoprotein Prp3
Genome location	chr04:18662156..18668975
RNA-Seq Expression	MELO3C030596
Synteny	MELO3C030596
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033141.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]

2.6e-23

81.05

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Query:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG
        VSSISTTNENKGVSITRSHEVHGK STD TSSTAGKSGNLSLDAL KAKKALQMQ +L ++   I    EKALQ ENRQLAN  KENEKALVERG
Subjt:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG

KAA0040511.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]

7.6e-23

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Query:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG
        VSSISTTNENKGVSITRSHEVHGK STD TSSTAGKSGNLSLDAL KAKKALQ+Q +L ++   I    EKALQ ENRQLAN  KENEKALVERG
Subjt:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG

TYK14912.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]

2.6e-23

81.05

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Query:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG
        VSSISTTNENKGVSITRSHEVHGK STD TSSTAGKSGNLSLDAL KAKKALQMQ +L ++   I    EKALQ ENRQLAN  KENEKALVERG
Subjt:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG

TYK17092.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]

2.6e-23

81.05

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Query:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG
        VSSISTTNENKGVSITRSHEVHGK STD TSSTAGKSGNLSLDAL KAKKALQMQ +L ++   I    EKALQ ENRQLAN  KENEKALVERG
Subjt:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG

TYK23452.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]

2.6e-23

81.05

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Query:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG
        VSSISTTNENKGVSITRSHEVHGK STD TSSTAGKSGNLSLDAL KAKKALQMQ +L ++   I    EKALQ ENRQLAN  KENEKALVERG
Subjt:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TFT1 U4/U6 small nuclear ribonucleoprotein Prp3

3.7e-23

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Query:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG
        VSSISTTNENKGVSITRSHEVHGK STD TSSTAGKSGNLSLDAL KAKKALQ+Q +L ++   I    EKALQ ENRQLAN  KENEKALVERG
Subjt:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG

A0A5D3CTY3 U4/U6 small nuclear ribonucleoprotein Prp3

1.3e-23

81.05

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Query:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG
        VSSISTTNENKGVSITRSHEVHGK STD TSSTAGKSGNLSLDAL KAKKALQMQ +L ++   I    EKALQ ENRQLAN  KENEKALVERG
Subjt:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG

A0A5D3CZW3 U4/U6 small nuclear ribonucleoprotein Prp3

1.3e-23

81.05

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Query:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG
        VSSISTTNENKGVSITRSHEVHGK STD TSSTAGKSGNLSLDAL KAKKALQMQ +L ++   I    EKALQ ENRQLAN  KENEKALVERG
Subjt:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG

A0A5D3D4Z0 U4/U6 small nuclear ribonucleoprotein Prp3

1.3e-23

81.05

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Query:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG
        VSSISTTNENKGVSITRSHEVHGK STD TSSTAGKSGNLSLDAL KAKKALQMQ +L ++   I    EKALQ ENRQLAN  KENEKALVERG
Subjt:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG

A0A5D3DIR5 U4/U6 small nuclear ribonucleoprotein Prp3

1.3e-23

81.05

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Query:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG
        VSSISTTNENKGVSITRSHEVHGK STD TSSTAGKSGNLSLDAL KAKKALQMQ +L ++   I    EKALQ ENRQLAN  KENEKALVERG
Subjt:  VSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQ-ENRQLANKVKENEKALVERG

SwissProt top hits

e value

%identity

Alignment

O22328 Agamous-like MADS-box protein AGL8 homolog

6.2e-04

46.03

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Query:  NLSLDALAKAKKALQMQNQLMQESISILHKKEKALQE-NRQLANKVKENEKALVERGQCDVPN
        NL     +  K     +NQLM ESIS+L K+++ALQE N QL+ KVKE EK + ++ Q D  N
Subjt:  NLSLDALAKAKKALQMQNQLMQESISILHKKEKALQE-NRQLANKVKENEKALVERGQCDVPN

Q42429 Agamous-like MADS-box protein AGL8 homolog

8.2e-04

46.03

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Query:  NLSLDALAKAKKALQMQNQLMQESISILHKKEKALQE-NRQLANKVKENEKALVERGQCDVPN
        NL     +  K     +NQLM ESIS+L K+++ALQE N QL+ KVKE EK + ++ Q D  N
Subjt:  NLSLDALAKAKKALQMQNQLMQESISILHKKEKALQE-NRQLANKVKENEKALVERGQCDVPN

Q9C7E7 Protein RDM16

5.1e-06

54.88

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Query:  VSSISTTNENKGVSITRSHEVHGKFSTD-RTSSTAGK-SGNLSLDA---LAKAKKALQMQNQLMQ--ESISILHKKEKALQE
        VSSISTT+ENK  S+ RSHEV GK STD R  STAGK S NL LD+    AKA+KALQ+Q  L    +++ +L K  K   E
Subjt:  VSSISTTNENKGVSITRSHEVHGKFSTD-RTSSTAGK-SGNLSLDA---LAKAKKALQMQNQLMQ--ESISILHKKEKALQE

Arabidopsis top hits

e value

%identity

Alignment

AT1G28060.1 Pre-mRNA-splicing factor 3

3.6e-07

54.88

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Query:  VSSISTTNENKGVSITRSHEVHGKFSTD-RTSSTAGK-SGNLSLDA---LAKAKKALQMQNQLMQ--ESISILHKKEKALQE
        VSSISTT+ENK  S+ RSHEV GK STD R  STAGK S NL LD+    AKA+KALQ+Q  L    +++ +L K  K   E
Subjt:  VSSISTTNENKGVSITRSHEVHGKFSTD-RTSSTAGK-SGNLSLDA---LAKAKKALQMQNQLMQ--ESISILHKKEKALQE

AT1G69120.1 K-box region and MADS-box transcription factor family protein

3.8e-04

50.91

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Query:  QNQLMQESISILHKKEKALQE-NRQLANKVKENEKAL-VERGQCDVPNLVHNKRP
        +NQLM ESI+ L KKEKA+QE N  L+ ++KE EK L  ++ Q D  N  HN  P
Subjt:  QNQLMQESISILHKKEKALQE-NRQLANKVKENEKAL-VERGQCDVPNLVHNKRP

Sequences

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CDS sequence

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mRNA sequence

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ACCAAAATTGTATCTTCAATTTCTACCACAAATGAAAATAAGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATTTAGTACAGATAGGACATCCTCAACTGC
TGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAGCAAAAGCTAAGAAAGCTTTACAGATGCAGAACCAACTAATGCAAGAATCTATTTCAATATTGCACAAAAAGGAAA
AGGCATTGCAAGAGAACAGACAACTAGCAAATAAGGTAAAGGAAAATGAGAAGGCTTTGGTTGAACGTGGACAGTGCGATGTTCCAAACTTGGTTCATAATAAACGGCCC
ATTTTTTGAATGACACCACCAATTCCTTCTTTATCTTTCGGGTATATTCCTCTTTCTCTCTTTCAACTGAGAAATCATTTCTCCTTATGTTAATAGATACGTATAGCCTG
TATTGATTCAACTATATCATAATTTCATCGTCAATATACGAAGAAAGAAGCTGCCATTAGTTATCTTGAAGGGATAATTGAGAAACTAAGGAGTACTAAGTTGCATCGAC
AAAGGGTTACTACTAACGAAGTGTTCGCCGACATTGTAACGTCCAAAAAATTAAGATAATTTATTGGGCGTTATTTTGAATTCATTTAATGAGAATTATTTGATTTATGT
GAGAATTGAAATTAATTAAATATTTGTTGGATGAATATTTAATTAATTAGAGGTTTTGACATGTGGTGTTTGTGGGTTTTTGATTAAATAGTAAGTTAACAGAACCAAGT
AAAGTTGTGGATTTTTAGTGTTGTTGAAGTTGAAATTAATTAAATAATTATGGATGTTATTTAATTAAATTGTAGAGTAGAAAGTTTGTTGGAGATTTGATAATTATATC
TATATGTGG

Protein sequence

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TKIVSSISTTNENKGVSITRSHEVHGKFSTDRTSSTAGKSGNLSLDALAKAKKALQMQNQLMQESISILHKKEKALQENRQLANKVKENEKALVERGQCDVPNLVHNKRP
IF

MELO3C030596 (gene) of Melon (DHL92) v4 genome