CuGenDBv2

Gene ID	MELO3C030607
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	30-kDa cleavage and polyadenylation specificity factor 30
Genome location	chr04:6598663..6602436
RNA-Seq Expression	MELO3C030607
Synteny	MELO3C030607
Gene Ontology terms	GO:0048024 - regulation of mRNA splicing, via spliceosome (biological process) GO:0005634 - nucleus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR007275 - YTH domain

Homology

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GenBank top hits

e value

%identity

Alignment

EAZ02076.1 hypothetical protein OsI_24157 [Oryza sativa Indica Group]

6.3e-06

58.06

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Query:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA
        +KP +ND   S    S NQ  RI +      SRYFIVKS N ENLE+SVQQG++ATQRSNEA
Subjt:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA

EEE66216.1 hypothetical protein OsJ_22357 [Oryza sativa Japonica Group]

6.3e-06

58.06

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Query:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA
        +KP +ND   S    S NQ  RI +      SRYFIVKS N ENLE+SVQQG++ATQRSNEA
Subjt:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA

KAF2928080.1 hypothetical protein DAI22_06g252400 [Oryza sativa Japonica Group]

6.3e-06

58.06

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Query:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA
        +KP +ND   S    S NQ  RI +      SRYFIVKS N ENLE+SVQQG++ATQRSNEA
Subjt:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA

XP_010687042.1 PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Beta vulgaris subsp. vulgaris]

6.3e-06

58.46

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Query:  ISRKPGSNDSQLSNL-GNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA
        + + P +   QL NL  N  NQ GRI +      +RYFIVKS N ENLELSVQQGV+ATQRSNEA
Subjt:  ISRKPGSNDSQLSNL-GNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA

XP_015644405.1 zinc finger CCCH domain-containing protein 45 [Oryza sativa Japonica Group]

6.3e-06

58.06

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Query:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA
        +KP +ND   S    S NQ  RI +      SRYFIVKS N ENLE+SVQQG++ATQRSNEA
Subjt:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA

TrEMBL top hits

e value

%identity

Alignment

A0A0D3GJW1 Uncharacterized protein

3.1e-06

58.06

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Query:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA
        +KP +ND   S    S NQ  RI +      SRYFIVKS N ENLE+SVQQG++ATQRSNEA
Subjt:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA

A0A0E0E5B0 Uncharacterized protein

3.1e-06

58.06

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Query:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA
        +KP +ND   S    S NQ  RI +      SRYFIVKS N ENLE+SVQQG++ATQRSNEA
Subjt:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA

A0A0E0GD41 Uncharacterized protein

3.1e-06

58.06

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Query:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA
        +KP +ND   S    S NQ  RI +      SRYFIVKS N ENLE+SVQQG++ATQRSNEA
Subjt:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA

A0A0E0LEN8 Uncharacterized protein

3.1e-06

58.06

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Query:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA
        +KP +ND   S    S NQ  RI +      SRYFIVKS N ENLE+SVQQG++ATQRSNEA
Subjt:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA

A0A0E0Q1M1 Uncharacterized protein

3.1e-06

58.06

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Query:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA
        +KP +ND   S    S NQ  RI +      SRYFIVKS N ENLE+SVQQG++ATQRSNEA
Subjt:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA

SwissProt top hits

e value

%identity

Alignment

A9LNK9 30-kDa cleavage and polyadenylation specificity factor 30

8.6e-06

80.65

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Query:  SRYFIVKSLNFENLELSVQQGVFATQRSNEA
        +RYF+VKS N EN ELSVQQGV+ATQRSNEA
Subjt:  SRYFIVKSLNFENLELSVQQGVFATQRSNEA

Q0DA50 Zinc finger CCCH domain-containing protein 45

8.3e-09

58.06

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Query:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA
        +KP +ND   S    S NQ  RI +      SRYFIVKS N ENLE+SVQQG++ATQRSNEA
Subjt:  RKPGSNDSQLSNLGNSGNQIGRIVSL----NSRYFIVKSLNFENLELSVQQGVFATQRSNEA

Arabidopsis top hits

e value

%identity

Alignment

AT1G30460.1 cleavage and polyadenylation specificity factor 30

6.1e-07

80.65

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Query:  SRYFIVKSLNFENLELSVQQGVFATQRSNEA
        +RYF+VKS N EN ELSVQQGV+ATQRSNEA
Subjt:  SRYFIVKSLNFENLELSVQQGVFATQRSNEA

AT4G11970.1 YTH family protein

9.7e-05

56.67

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Query:  SRYFIVKSLNFENLELSVQQGVFATQRSNE
        +RYFI+KSLN++N+++SV++G++ATQ  NE
Subjt:  SRYFIVKSLNFENLELSVQQGVFATQRSNE

AT4G11970.2 YTH family protein

9.7e-05

56.67

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Query:  SRYFIVKSLNFENLELSVQQGVFATQRSNE
        +RYFI+KSLN++N+++SV++G++ATQ  NE
Subjt:  SRYFIVKSLNFENLELSVQQGVFATQRSNE

AT4G11970.3 YTH family protein

9.7e-05

56.67

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Query:  SRYFIVKSLNFENLELSVQQGVFATQRSNE
        +RYFI+KSLN++N+++SV++G++ATQ  NE
Subjt:  SRYFIVKSLNFENLELSVQQGVFATQRSNE

Sequences

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CDS sequence

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ATGGTTTCCGACCAACTTCCTATAGAAGAAACAATCCTTCTCAAGTTCTTAACGAAGCTTGTGATATCAAGAAAACCAGGTTCAAACGATAGTCAACTTTCCAATCTTGG
AAATTCAGGGAATCAGATAGGGAGAATAGTGTCCTTAAATTCGAGGTACTTTATTGTTAAAAGTTTGAACTTTGAGAATTTGGAGTTATCTGTACAACAAGGGGTATTTG
CAACTCAAAGAAGCAATGAAGCTTTTGATTTTGGTGATAATGGAATGAAATGTGTCTTACTAGCGGAAAAAAGATCCAACGATGACAAAGCTGAGTTGGAAATAGGTTGT
TCCCTTAAGGACTTAATCCAAGTCTTGAACAAGGGGCCCCACCTTCTCATTGCTCCGAGAAGGATTCTGATTTATAGGTTGGACCTTAAACCAATTGTTCAATAG

mRNA sequence

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Protein sequence

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MVSDQLPIEETILLKFLTKLVISRKPGSNDSQLSNLGNSGNQIGRIVSLNSRYFIVKSLNFENLELSVQQGVFATQRSNEAFDFGDNGMKCVLLAEKRSNDDKAELEIGC
SLKDLIQVLNKGPHLLIAPRRILIYRLDLKPIVQ

MELO3C030607 (gene) of Melon (DHL92) v4 genome