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MELO3C030676 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C030676
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionSm domain-containing protein
Genome locationchr04:24897295..24898253
RNA-Seq ExpressionMELO3C030676
SyntenyMELO3C030676
Gene Ontology termsNA
InterPro domainsIPR044641 - Sm-like protein Lsm7/SmG


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBG96337.1 Small nuclear ribonucleoprotein family protein [Prunus dulcis]2.5e-0693.75Show/hide
Query:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
        MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Subjt:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
KAF0897709.1 hypothetical protein E2562_000425 [Oryza meyeriana var. granulata]2.5e-0693.75Show/hide
Query:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
        MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Subjt:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
KAF8117614.1 hypothetical protein N665_0009s0131 [Sinapis alba]2.5e-0693.75Show/hide
Query:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
        MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Subjt:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
KAG2301991.1 hypothetical protein Bca52824_030642 [Brassica carinata]2.5e-0693.75Show/hide
Query:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
        MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Subjt:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
XP_013710305.1 sm-like protein LSM7 [Brassica napus]2.5e-0693.75Show/hide
Query:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
        MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Subjt:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
TrEMBL top hitse value%identityAlignment
A0A059A1Q8 Sm domain-containing protein1.2e-0693.75Show/hide
Query:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
        MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Subjt:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
A0A6J1KGY2 sm-like protein LSM71.2e-0693.75Show/hide
Query:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
        MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Subjt:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
A0A6M2ECQ6 Sm domain-containing protein1.2e-0693.75Show/hide
Query:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
        MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Subjt:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
M5X186 Sm domain-containing protein1.2e-0693.75Show/hide
Query:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
        MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Subjt:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
M5XEA5 Sm domain-containing protein1.2e-0693.75Show/hide
Query:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
        MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Subjt:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
SwissProt top hitse value%identityAlignment
Q9SI54 Sm-like protein LSM73.2e-0993.75Show/hide
Query:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
        MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Subjt:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
Arabidopsis top hitse value%identityAlignment
AT2G03870.1 Small nuclear ribonucleoprotein family protein2.3e-1093.75Show/hide
Query:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
        MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Subjt:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
AT2G03870.2 Small nuclear ribonucleoprotein family protein2.3e-1093.75Show/hide
Query:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET
        MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Subjt:  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGAAGAAAAGAAATTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGTAGACAAGTTACTGAAACGCCCTAA
mRNA sequenceShow/hide mRNA sequence
ACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCATCACTTCCATTGAAAGTTCCTGGGGCGTTTAATTTTACGGAGGAGCTGAGAAATTGATTGCGCGATGTCTGGAA
GAAAAGAAATTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGTAGACAAGTTACTGAAACGCCCTAAGGATATTATCAATTGCTA
AACCTTGTGCCGGATGAAGCTATAGAGTTTTTAAGAGGTAACCAATTAACTGGATTCTGGCAGAATATATGAGATTTGTGGAATTTTGTGGGCCTTTAGACTGAAAGCTC
ACTGAGTATCAAACCTTTGTATAACATCTATCATATTGCTTTTCTCATCTATCATCACTTTGCTTTATCTGACTGCTTTTTTAAATTTACGAGAAACAATTAGA
Protein sequenceShow/hide protein sequence
MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTETP