CuGenDBv2

Gene ID	MELO3C030677
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Pectin lyase-like superfamily protein
Genome location	chr04:25272608..25273639
RNA-Seq Expression	MELO3C030677
Synteny	MELO3C030677
Gene Ontology terms	GO:0005975 - carbohydrate metabolic process (biological process) GO:0004650 - polygalacturonase activity (molecular function)
InterPro domains	IPR000743 - Glycoside hydrolase, family 28 IPR011050 - Pectin lyase fold/virulence factor IPR012334 - Pectin lyase fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0045593.1 exopolygalacturonase-like [Cucumis melo var. makuwa]

5.7e-45

87.04

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKYSKGK
        LGKYSK K
Subjt:  LGKYSKGK

KAA0045594.1 exopolygalacturonase-like [Cucumis melo var. makuwa]

5.7e-45

87.04

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKYSKGK
        LGKYSK K
Subjt:  LGKYSKGK

KAA0045610.1 exopolygalacturonase-like [Cucumis melo var. makuwa]

5.7e-45

87.04

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKYSKGK
        LGKYSK K
Subjt:  LGKYSKGK

XP_008466933.1 PREDICTED: polygalacturonase-like, partial [Cucumis melo]

5.7e-45

87.04

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKYSKGK
        LGKYSK K
Subjt:  LGKYSKGK

XP_016903689.1 PREDICTED: exopolygalacturonase-like, partial [Cucumis melo]

5.7e-45

87.04

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKYSKGK
        LGKYSK K
Subjt:  LGKYSKGK

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E643 exopolygalacturonase-like

2.7e-45

87.04

Show/hide

Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKYSKGK
        LGKYSK K
Subjt:  LGKYSKGK

A0A5A7TR51 Exopolygalacturonase-like

2.7e-45

87.04

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKYSKGK
        LGKYSK K
Subjt:  LGKYSKGK

A0A5A7TRZ0 Exopolygalacturonase-like

2.7e-45

87.04

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKYSKGK
        LGKYSK K
Subjt:  LGKYSKGK

A0A5D3BWP4 Exopolygalacturonase-like

2.7e-45

87.04

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKYSKGK
        LGKYSK K
Subjt:  LGKYSKGK

A0A5D3DYI3 Exopolygalacturonase-like

2.7e-45

87.04

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKYSKGK
        LGKYSK K
Subjt:  LGKYSKGK

SwissProt top hits

e value

%identity

Alignment

P24548 Exopolygalacturonase (Fragment)

7.0e-30

56.73

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        NL+   +TNSI++D+T+LDSKN+H+N++GCKNLTF+   I+A   S N DGIH G S+ +NI+NT I  GDDCIS+GD +K I I ++TCG G+GIS+ S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKY
        LG+Y
Subjt:  LGKY

Q39766 Polygalacturonase

4.5e-29

54.81

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        N++F+F+TN++++DITS DSK +HIN+  CKN+T + + I A   SPN DGIH G SE +NI+ ++I  GDDCIS+GD  K +VI ++TCG G+GISI S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKY
        LGK+
Subjt:  LGKY

Q39786 Polygalacturonase

5.9e-29

54.81

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        N++F+F+TN++++DITS DSK +HIN+  CKN+T + + I A   SPN DGIH G SE +NI+ ++I  GDDCIS+GD  K +VI ++TCG G+GISI S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKY
        LGK+
Subjt:  LGKY

Q40312 Polygalacturonase

2.6e-32

59.05

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        N  FNF+ NSIV+ +TS DSKN+H+ + GCKN+TFD  TITA G+SPN DGIH G S  + ILNTNI  GDDC+S+GD +KQI +  V CG G+G+S+ S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKYS
        LGK++
Subjt:  LGKYS

Q6H9K0 Exopolygalacturonase (Fragment)

2.9e-28

54.63

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        NL+F+F+ +++V+DITSL+SK +HIN+L C+++TF HVT+TA G S N DGIH G S+ + I NT IA GDDCIS+G  ++ + I  V CG G+GISI S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKYSKGK
        LG+Y+  K
Subjt:  LGKYSKGK

Arabidopsis top hits

e value

%identity

Alignment

AT3G07820.1 Pectin lyase-like superfamily protein

1.8e-28

52.88

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        +++F+FI NS ++DI+S+D+KN+HIN+LG KN+T +++ I A  +SPN DGIH G S+ + ILN+ I+ GDDCIS+GD  K + +  VTCG G+GIS+ S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKY
        LG+Y
Subjt:  LGKY

AT3G07830.1 Pectin lyase-like superfamily protein

7.9e-29

Show/hide

Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        +++F+F+TN+ ++DI+S+D+KN+HIN++G KN+TFD+V I A   SPN DGIH G S  ++I+N+ I+ GDDC+S+GD    +++ +V CG G+GIS+ S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKY
        LG+Y
Subjt:  LGKY

AT3G07840.1 Pectin lyase-like superfamily protein

7.2e-30

53.85

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        +++F+F+ N+ ++DI+S+D+KN+HIN+LG KN+TFD+V + A   SPN DGIH G SE + ILN+ IA GDDCIS+GD  K + + +V CG G+GIS+ S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKY
        LG+Y
Subjt:  LGKY

AT3G07850.1 Pectin lyase-like superfamily protein

1.0e-23

46.15

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        N++F  +TNS +  ITS +SK +H+N+L CKN+T   + I A   S N DGIH G S  +N++   I  GDDC+S+GD  + +++ +V CG G+GISI S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKY
        LG+Y
Subjt:  LGKY

AT5G48140.1 Pectin lyase-like superfamily protein

3.0e-28

52.38

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Query:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS
        +++F+F+T++ ++ ITSLD+K++HIN++G KN+TF+ V I A   SPN DGIH G S+ I I+N+ I+ GDDC+S+GD  K +++  VTCG G+GISI S
Subjt:  NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRS

Query:  LGKYS
        LG+YS
Subjt:  LGKYS

Sequences

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CDS sequence

Show/hide CDS sequence

AATTTGAAGTTCAATTTCATCACGAATTCAATAGTGAAGGACATAACGTCATTGGATAGCAAGAATTATCATATTAATCTTTTGGGTTGCAAGAATCTTACCTTTGACCA
CGTGACAATTACTGCTATGGGGAATAGTCCCAACATTGATGGAATTCACAGGGGTAGTTCAGAACAGATTAACATTCTCAATACCAATATCGCAATTGGAGATGATTGTA
TATCCATGGGAGATACCAACAAACAAATAGTTATTAATGATGTTACTTGCGGACTAGGATATGGAATTAGCATACGAAGTTTGGGAAAATATAGCAAGGGAAAAAGAAGT
GGTAGGAGTGATGGTGAAAAAATGTAA

mRNA sequence

Show/hide mRNA sequence

GAATTTGAAGTTCAATTTCATCACGAATTCAATAGTGAAGGACATAACGTCATTGGATAGCAAGAATTATCATATTAATCTTTTGGGTTGCAAGAATCTTACCTTTGACC
ACGTGACAATTACTGCTATGGGGAATAGTCCCAACATTGATGGAATTCACAGGGGTAGTTCAGAACAGATTAACATTCTCAATACCAATATCGCAATTGGAGATGATTGT
ATATCCATGGGAGATACCAACAAACAAATAGTTATTAATGATGTTACTTGCGGACTAGGATATGGAATTAGCATACGAAGTTTGGGAAAATATAGCAAGGGAAAAAGAAG
TGGTAGGAGTGATGGTGAAAAAATGTAAATTGACCGGTACTACAAACAGTGTTAGGATCAAAACATGGCCAGATTCTACCGTCGCATTCCCAGCCTCTAACATGCATTTT
GAAGATATAGAAATGGTTAATGTTAGCAATACTGTCATCATAAACCAAGAATATCGTCCATGGAATCAATGCAATCGAAAGGTTCCATAAAAAATTAAGATCAGCAACGT
AAGCTTAAAGAATGTCAGCGGCACATCTGTGACTCCAGTAGCAATCAAAATTGTTTGCAGTCAAAGTAATCCATGTGAGAGTGGAAGTTGCTTTGACCTCACTTATAGTG
GAAGTGGAGGTTCAATTAAGTCTCAGTGTGCAAATGTGAAATCTGTCATTTCAAGAAAACAAAATCCTCCAATATGTGGTGAACCTGCACCAATTGATGCTCCATCAACC
AATTGAAGTTTTGTCAATGTGACAAATGTTTCAAACCATTTGAACTATCCTTTAATTTTAATAGCATATTTTTGTTTTACCCTGAAAAAATTCGTTGGACAAATTTGGTT
ACATACATTTTATGATTATAGGCATGC

Protein sequence

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NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKYSKGKRS
GRSDGEKM

MELO3C030677 (gene) of Melon (DHL92) v4 genome