CuGenDBv2

Gene ID	MELO3C030703
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Reverse transcriptase
Genome location	chr05:2629116..2629814
RNA-Seq Expression	MELO3C030703
Synteny	MELO3C030703
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

2.1e-120

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Query:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV
        MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRL+EISEKTNTIDAVAGRVEGFPIQELMTRVDALETT+NIGRTVNYERGDSSTGSVAHIEERV
Subjt:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV

Query:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK
        QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFC ARD KALENYIFDLEQYFRATNTVTEEAK
Subjt:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK

Query:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW
        V LATMHLSEDAKLWWRSRFVD+QEGRC IDTW
Subjt:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW

KAA0060480.1 reverse transcriptase [Cucumis melo var. makuwa]

6.6e-122

98.71

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Query:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV
        MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV
Subjt:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV

Query:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK
        QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFC ARD KALENYIFDLEQYFRATNTVTEEAK
Subjt:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK

Query:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW
        V LATMHLSEDAKLWWRSRFVDMQEGRCAIDTW
Subjt:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]

2.1e-120

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Query:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV
        MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRL+EISEKTNTIDAVAGRVEGFPIQELMTRVDALETT+NIGRTVNYERGDSSTGSVAHIEERV
Subjt:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV

Query:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK
        QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFC ARD KALENYIFDLEQYFRATNTVTEEAK
Subjt:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK

Query:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW
        V LATMHLSEDAKLWWRSRFVD+QEGRC IDTW
Subjt:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW

TYK18566.1 uncharacterized protein E5676_scaffold119G00720 [Cucumis melo var. makuwa]

5.6e-121

97.85

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Query:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV
        MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV
Subjt:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV

Query:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK
        QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFC ARD KALENYIFDLEQYFRATNTVTEEAK
Subjt:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK

Query:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW
        V LATMHLSEDAKLWWRSRFVD+QEGRC IDTW
Subjt:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW

TYK28713.1 reverse transcriptase [Cucumis melo var. makuwa]

1.6e-120

97.42

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Query:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV
        MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRL+EISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV
Subjt:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV

Query:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK
        QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFC ARD KALENYIFDLEQYFRATNTVTEEAK
Subjt:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK

Query:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW
        V LATMHLSEDAKLWWRSRFVD+QEGRC IDTW
Subjt:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UZE9 Reverse transcriptase

3.2e-122

98.71

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Query:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV
        MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV
Subjt:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV

Query:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK
        QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFC ARD KALENYIFDLEQYFRATNTVTEEAK
Subjt:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK

Query:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW
        V LATMHLSEDAKLWWRSRFVDMQEGRCAIDTW
Subjt:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW

A0A5D3BRZ6 Reverse transcriptase

1.0e-120

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Query:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV
        MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRL+EISEKTNTIDAVAGRVEGFPIQELMTRVDALETT+NIGRTVNYERGDSSTGSVAHIEERV
Subjt:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV

Query:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK
        QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFC ARD KALENYIFDLEQYFRATNTVTEEAK
Subjt:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK

Query:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW
        V LATMHLSEDAKLWWRSRFVD+QEGRC IDTW
Subjt:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW

A0A5D3C4R1 Reverse transcriptase

1.0e-120

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Query:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV
        MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRL+EISEKTNTIDAVAGRVEGFPIQELMTRVDALETT+NIGRTVNYERGDSSTGSVAHIEERV
Subjt:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV

Query:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK
        QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFC ARD KALENYIFDLEQYFRATNTVTEEAK
Subjt:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK

Query:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW
        V LATMHLSEDAKLWWRSRFVD+QEGRC IDTW
Subjt:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW

A0A5D3D4V1 Retrotrans_gag domain-containing protein

2.7e-121

97.85

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Query:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV
        MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV
Subjt:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV

Query:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK
        QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFC ARD KALENYIFDLEQYFRATNTVTEEAK
Subjt:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK

Query:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW
        V LATMHLSEDAKLWWRSRFVD+QEGRC IDTW
Subjt:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW

A0A5D3DY93 Reverse transcriptase

7.9e-121

97.42

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Query:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV
        MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRL+EISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV
Subjt:  MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERV

Query:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK
        QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFC ARD KALENYIFDLEQYFRATNTVTEEAK
Subjt:  QELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAK

Query:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW
        V LATMHLSEDAKLWWRSRFVD+QEGRC IDTW
Subjt:  VMLATMHLSEDAKLWWRSRFVDMQEGRCAIDTW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCGTCGTCGAATCCATCGGGCAAGGCCCAGAAAGACCGACTAGTAGAGCTAGAAGAACAGATGCTCTACCTAGTCGAAGTTCCCGACTCCATCCGCTACTTGGAGTC
TCGTCTCGATGAAATTTCCGAGAAAACTAATACGATCGATGCGGTAGCTGGCCGTGTCGAAGGGTTTCCGATACAAGAGTTGATGACAAGGGTCGACGCCCTGGAAACAA
CTATAAACATCGGAAGAACTGTCAACTACGAGCGTGGAGACAGTTCGACGGGCTCTGTTGCCCATATTGAGGAACGTGTTCAAGAGCTGGATAGCTCTCAAAAGACGCTG
TTAGAGATGATAAACGGCATGTCAGAGGACTTCCGAGCTACCCTCGATGTCGTCAGAAATGAAATCGCAGATGTGAATGCGAGACTGAGCCTCACAATGCGAGCAATGGC
AAATCAAGCTCCCGCTGGGGGAGCCATTCCGGTTAGTAGAGTGAAGATCCCGGAACCAAAGCCCTTCTGTGAGGCAAGAGACACGAAGGCCCTAGAAAACTATATCTTTG
ACCTGGAGCAATACTTCAGGGCCACAAACACGGTTACAGAGGAAGCCAAAGTCATGTTGGCGACGATGCATCTTTCTGAGGATGCCAAGTTATGGTGGAGGTCCCGATTT
GTTGACATGCAGGAGGGACGCTGCGCGATAGATACTTGG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTL
LEMINGMSEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCEARDTKALENYIFDLEQYFRATNTVTEEAKVMLATMHLSEDAKLWWRSRF
VDMQEGRCAIDTW

MELO3C030703 (gene) of Melon (DHL92) v4 genome