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MELO3C030832 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C030832
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr04:17666592..17667541
RNA-Seq ExpressionMELO3C030832
SyntenyMELO3C030832
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035966.1 F5J5.1 [Cucumis melo var. makuwa]2.1e-9883.87Show/hide
Query:  MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKI
        M++RI DELI+EFIVNL DEF DP  A+YQTVH RGFKF+IS  VINGFLGNTVD DCSPSC T E+L TVLS GTLSTWPVNGIPAAAL VKYAILHKI
Subjt:  MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKI

Query:  GIANWFPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDI
        GI NWFPS HASSI AALGTFLYQICNDDKVDTG FIYNQLLRHV SFGVKV IAF RLFSSLLLHLNG VLTT DAP PEPKTIA  YRLFQGSH+PDI
Subjt:  GIANWFPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDI

Query:  DHDVHPTQGPQIFYTTD
        DHDVHPTQGP IF TTD
Subjt:  DHDVHPTQGPQIFYTTD

KAA0048225.1 uncharacterized protein E6C27_scaffold63G001400 [Cucumis melo var. makuwa]5.3e-9783.41Show/hide
Query:  MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKI
        MQ+RI DELIREFIVNL D+F DP   NYQTVHIRGFKF+IS  VINGFLGNTVD DCSPSCPT EVL  VL GGTLSTWPVNGIP AA  +KYAILHKI
Subjt:  MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKI

Query:  GIANWFPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDI
        GIA WFPSSHA SI AALGTFLYQICN DKVD GAFIYNQLLRHV SFGVKV IAF RLFSSLLLHLNGAVLT  DAP  EPKTIA SYRLFQGSHVPDI
Subjt:  GIANWFPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDI

Query:  DHDVHPTQGPQIFYTTD
        DHDVHPT+GP+IF TTD
Subjt:  DHDVHPTQGPQIFYTTD

KAA0058446.1 uncharacterized protein E6C27_scaffold132G00290 [Cucumis melo var. makuwa]1.1e-9793.78Show/hide
Query:  EFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKIGIANWFPSSHA
        EF+      F    GANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKIGIANWFPSSHA
Subjt:  EFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKIGIANWFPSSHA

Query:  SSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDIDHDV
        SSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDIDHD+
Subjt:  SSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDIDHDV

TYK30437.1 F5J5.1 [Cucumis melo var. makuwa]2.1e-9883.87Show/hide
Query:  MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKI
        M++RI DELI+EFIVNL DEF DP  A+YQTVH RGFKF+IS  VINGFLGNTVD DCSPSC T E+L TVLS GTLSTWPVNGIPAAAL VKYAILHKI
Subjt:  MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKI

Query:  GIANWFPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDI
        GI NWFPS HASSI AALGTFLYQICNDDKVDTG FIYNQLLRHV SFGVKV IAF RLFSSLLLHLNG VLTT DAP PEPKTIA  YRLFQGSH+PDI
Subjt:  GIANWFPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDI

Query:  DHDVHPTQGPQIFYTTD
        DHDVHPTQGP IF TTD
Subjt:  DHDVHPTQGPQIFYTTD

XP_008451642.1 PREDICTED: uncharacterized protein LOC103492875 [Cucumis melo]1.0e-10086.11Show/hide
Query:  MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKI
        +Q+RI DELIREFI+NL DEF DP  A+YQTVHIRGFKF+IS VVINGFLGNTVD DCS SCPTTEVL TVLSGGTLSTW VNGIPAAAL +KYAILHKI
Subjt:  MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKI

Query:  GIANWFPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDI
        GIANW  SSHASSIFAALGTFLYQICNDDKVDTG FIYNQLLR+V SFGVKVSIAF RLFSSLLLHLNGAVLT  DAP PEPKTIA SYR+FQGSHVPDI
Subjt:  GIANWFPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDI

Query:  DHDVHPTQGPQIFYTT
        DHDVHPTQGP IF TT
Subjt:  DHDVHPTQGPQIFYTT

TrEMBL top hitse value%identityAlignment
A0A1S3BS17 uncharacterized protein LOC1034928755.0e-10186.11Show/hide
Query:  MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKI
        +Q+RI DELIREFI+NL DEF DP  A+YQTVHIRGFKF+IS VVINGFLGNTVD DCS SCPTTEVL TVLSGGTLSTW VNGIPAAAL +KYAILHKI
Subjt:  MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKI

Query:  GIANWFPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDI
        GIANW  SSHASSIFAALGTFLYQICNDDKVDTG FIYNQLLR+V SFGVKVSIAF RLFSSLLLHLNGAVLT  DAP PEPKTIA SYR+FQGSHVPDI
Subjt:  GIANWFPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDI

Query:  DHDVHPTQGPQIFYTT
        DHDVHPTQGP IF TT
Subjt:  DHDVHPTQGPQIFYTT

A0A5A7T169 F5J5.11.0e-9883.87Show/hide
Query:  MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKI
        M++RI DELI+EFIVNL DEF DP  A+YQTVH RGFKF+IS  VINGFLGNTVD DCSPSC T E+L TVLS GTLSTWPVNGIPAAAL VKYAILHKI
Subjt:  MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKI

Query:  GIANWFPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDI
        GI NWFPS HASSI AALGTFLYQICNDDKVDTG FIYNQLLRHV SFGVKV IAF RLFSSLLLHLNG VLTT DAP PEPKTIA  YRLFQGSH+PDI
Subjt:  GIANWFPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDI

Query:  DHDVHPTQGPQIFYTTD
        DHDVHPTQGP IF TTD
Subjt:  DHDVHPTQGPQIFYTTD

A0A5D3BET1 Uncharacterized protein5.1e-9893.78Show/hide
Query:  EFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKIGIANWFPSSHA
        EF+      F    GANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKIGIANWFPSSHA
Subjt:  EFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKIGIANWFPSSHA

Query:  SSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDIDHDV
        SSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDIDHD+
Subjt:  SSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDIDHDV

A0A5D3CCI4 Uncharacterized protein2.5e-9783.41Show/hide
Query:  MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKI
        MQ+RI DELIREFIVNL D+F DP   NYQTVHIRGFKF+IS  VINGFLGNTVD DCSPSCPT EVL  VL GGTLSTWPVNGIP AA  +KYAILHKI
Subjt:  MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKI

Query:  GIANWFPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDI
        GIA WFPSSHA SI AALGTFLYQICN DKVD GAFIYNQLLRHV SFGVKV IAF RLFSSLLLHLNGAVLT  DAP  EPKTIA SYRLFQGSHVPDI
Subjt:  GIANWFPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDI

Query:  DHDVHPTQGPQIFYTTD
        DHDVHPT+GP+IF TTD
Subjt:  DHDVHPTQGPQIFYTTD

A0A5D3E2Y4 F5J5.11.0e-9883.87Show/hide
Query:  MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKI
        M++RI DELI+EFIVNL DEF DP  A+YQTVH RGFKF+IS  VINGFLGNTVD DCSPSC T E+L TVLS GTLSTWPVNGIPAAAL VKYAILHKI
Subjt:  MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKI

Query:  GIANWFPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDI
        GI NWFPS HASSI AALGTFLYQICNDDKVDTG FIYNQLLRHV SFGVKV IAF RLFSSLLLHLNG VLTT DAP PEPKTIA  YRLFQGSH+PDI
Subjt:  GIANWFPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDI

Query:  DHDVHPTQGPQIFYTTD
        DHDVHPTQGP IF TTD
Subjt:  DHDVHPTQGPQIFYTTD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAAGAGAATTTTCGATGAGCTAATTAGAGAATTTATCGTCAATCTGCTTGATGAGTTTATTGATCCAGGTGGTGCTAATTATCAGACGGTGCACATTAGA
GGGTTCAAATTTTTGATTTCATCTGTTGTGATAAATGGTTTTCTTGGAAATACTGTTGATTTTGACTGCTCTCCATCATGTCCTACTACTGAGGTTCTAGTTACT
GTCTTATCTGGAGGGACCTTGTCCACATGGCCAGTGAATGGAATTCCTGCAGCTGCTCTCCGTGTCAAGTATGCCATTCTACACAAGATTGGCATTGCCAATTGG
TTCCCTTCCTCACATGCCTCAAGCATATTTGCTGCCTTAGGTACATTTTTGTATCAAATTTGCAATGATGATAAAGTAGATACAGGTGCCTTCATTTACAATCAA
CTATTGAGGCACGTTAAGTCATTTGGGGTCAAGGTTTCTATTGCTTTTCTGCGGTTGTTCTCCAGTCTGCTACTTCACCTAAATGGAGCGGTACTTACTACAATT
GATGCTCCTGAACCTGAACCTAAGACAATTGCTTTTAGCTACAGACTCTTTCAAGGCAGTCATGTACCTGATATTGACCATGATGTGCATCCAACTCAGGGCCCA
CAAATTTTTTACACTACTGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTTCTTTTCACCACGAGGAAAGCATTCAATGCTGGAAGTTTGTGATGCAGAAGAGAATTTTCGATGAGCTAATTAGAGAATTTATCGTCAATCTGCTTG
ATGAGTTTATTGATCCAGGTGGTGCTAATTATCAGACGGTGCACATTAGAGGGTTCAAATTTTTGATTTCATCTGTTGTGATAAATGGTTTTCTTGGAAATACTG
TTGATTTTGACTGCTCTCCATCATGTCCTACTACTGAGGTTCTAGTTACTGTCTTATCTGGAGGGACCTTGTCCACATGGCCAGTGAATGGAATTCCTGCAGCTG
CTCTCCGTGTCAAGTATGCCATTCTACACAAGATTGGCATTGCCAATTGGTTCCCTTCCTCACATGCCTCAAGCATATTTGCTGCCTTAGGTACATTTTTGTATC
AAATTTGCAATGATGATAAAGTAGATACAGGTGCCTTCATTTACAATCAACTATTGAGGCACGTTAAGTCATTTGGGGTCAAGGTTTCTATTGCTTTTCTGCGGT
TGTTCTCCAGTCTGCTACTTCACCTAAATGGAGCGGTACTTACTACAATTGATGCTCCTGAACCTGAACCTAAGACAATTGCTTTTAGCTACAGACTCTTTCAAG
GCAGTCATGTACCTGATATTGACCATGATGTGCATCCAACTCAGGGCCCACAAATTTTTTACACTACTGACTGAGATGAGTCTGCTGAAGGCTTCTTTGTGGATC
GTGAGTTAGCTACTCGCATCGTTAATTCCTTGACTGTTGAATCTCATGCACTGACTAACTCCATCACTCAATTTTCTGAACGTCGATTAGAGGTTGATGCTCTCA
TTCGA
Protein sequenceShow/hide protein sequence
MQKRIFDELIREFIVNLLDEFIDPGGANYQTVHIRGFKFLISSVVINGFLGNTVDFDCSPSCPTTEVLVTVLSGGTLSTWPVNGIPAAALRVKYAILHKIGIANW
FPSSHASSIFAALGTFLYQICNDDKVDTGAFIYNQLLRHVKSFGVKVSIAFLRLFSSLLLHLNGAVLTTIDAPEPEPKTIAFSYRLFQGSHVPDIDHDVHPTQGP
QIFYTTD