CuGenDBv2

Gene ID	MELO3C030848
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Genome location	chr05:11441620..11441864
RNA-Seq Expression	MELO3C030848
Synteny	MELO3C030848
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032394.1 retrotransposon protein [Cucumis melo var. makuwa]

5.8e-41

100

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Query:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN
        MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN
Subjt:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN

KAA0035078.1 retrotransposon protein [Cucumis melo var. makuwa]

2.9e-40

98.77

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Query:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN
        MGGWKSDNGTFRPGYLAQ VRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN
Subjt:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN

KAA0038975.1 retrotransposon protein [Cucumis melo var. makuwa]

3.8e-40

97.53

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Query:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN
        MGGWKSDNGTFRPGYLAQ VRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCI+AEKELFDN
Subjt:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN

KAA0065477.1 retrotransposon protein [Cucumis melo var. makuwa]

3.8e-40

97.53

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Query:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN
        MGGWKSDNGTFRPGYLAQ VRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCI+AEKELFDN
Subjt:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]

2.9e-40

98.77

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Query:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN
        MGGWKSDNGTFRPGYLAQ VRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN
Subjt:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMI8 Retrotransposon protein

2.8e-41

100

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Query:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN
        MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN
Subjt:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN

A0A5A7SWU2 Retrotransposon protein

1.4e-40

98.77

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Query:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN
        MGGWKSDNGTFRPGYLAQ VRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN
Subjt:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN

A0A5A7TRV1 Retrotransposon protein

1.8e-40

97.53

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Query:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN
        MGGWKSDNGTFRPGYLAQ VRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCI+AEKELFDN
Subjt:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN

A0A5A7VES2 Retrotransposon protein

1.4e-40

98.77

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Query:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN
        MGGWKSDNGTFRPGYLAQ VRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN
Subjt:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN

A0A5D3CWL2 Retrotransposon protein

1.8e-40

97.53

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Query:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN
        MGGWKSDNGTFRPGYLAQ VRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCI+AEKELFDN
Subjt:  MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGGGGATGGAAATCAGATAATGGTACGTTCCGCCCAGGTTACCTTGCGCAGTTTGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTCCGAGCAACA
ACTGTAATTGATTGTAGAATTAAGACACTGAAGCGAACATTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAA
TGTATCATTGCGGAGAAGGAATTATTTGATAAT

mRNA sequence

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Protein sequence

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MGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN

MELO3C030848 (gene) of Melon (DHL92) v4 genome