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MELO3C030889 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C030889
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr03:1587420..1588221
RNA-Seq ExpressionMELO3C030889
SyntenyMELO3C030889
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032344.1 uncharacterized protein E6C27_scaffold219G002060 [Cucumis melo var. makuwa]1.5e-6890.71Show/hide
Query:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID
        +LQPIWTQ DQAKISKDHLRLIKVLMGLRPEYESV+  LLHRSPLPSLD AIQEILFEEK LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FID
Subjt:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID

Query:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
        CPKIECRYC+K GHI++NCPIKPPRPRSYSTRAKNFTKPR
Subjt:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
KAA0051863.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]9.6e-6890Show/hide
Query:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID
        +LQPIWTQ DQA ISKDHLRLIKVLMGLRPEYESV+  LLHRSPLPSLD AIQEILFEEK LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FID
Subjt:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID

Query:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
        CPKIECRYC+K GHI+DNCPIKPPRPRSYST AKNFTKPR
Subjt:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
KAA0063009.1 Integrase, catalytic core [Cucumis melo var. makuwa]1.3e-6790.71Show/hide
Query:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID
        +LQPIWTQ DQAKISKDHLRLIKVLMGL PEYESVR  LLHRSPLPSLD AIQEILFEEK LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FID
Subjt:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID

Query:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
        CPKIECRYC+K GHI+DNCPIKPPRPRSYSTRAKNFTK R
Subjt:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
TYK21374.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]9.6e-6890Show/hide
Query:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID
        +LQPIWTQ DQA ISKDHLRLIKVLMGLRPEYESV+  LLHRSPLPSLD AIQEILFEEK LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FID
Subjt:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID

Query:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
        CPKIECRYC+K GHI+DNCPIKPPRPRSYST AKNFTKPR
Subjt:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
XP_008441928.1 PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]1.5e-6890.71Show/hide
Query:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID
        +LQPIWTQ DQAKISKDHLRLIKVLMGLRPEYESV+  LLHRSPLPSLD AIQEILFEEK LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FID
Subjt:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID

Query:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
        CPKIECRYC+K GHI++NCPIKPPRPRSYSTRAKNFTKPR
Subjt:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
TrEMBL top hitse value%identityAlignment
A0A1S3B566 uncharacterized protein LOC1034859237.2e-6990.71Show/hide
Query:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID
        +LQPIWTQ DQAKISKDHLRLIKVLMGLRPEYESV+  LLHRSPLPSLD AIQEILFEEK LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FID
Subjt:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID

Query:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
        CPKIECRYC+K GHI++NCPIKPPRPRSYSTRAKNFTKPR
Subjt:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
A0A5A7SMD6 Uncharacterized protein7.2e-6990.71Show/hide
Query:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID
        +LQPIWTQ DQAKISKDHLRLIKVLMGLRPEYESV+  LLHRSPLPSLD AIQEILFEEK LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FID
Subjt:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID

Query:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
        CPKIECRYC+K GHI++NCPIKPPRPRSYSTRAKNFTKPR
Subjt:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
A0A5A7U7G4 Retrovirus-related Pol polyprotein from transposon TNT 1-944.7e-6890Show/hide
Query:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID
        +LQPIWTQ DQA ISKDHLRLIKVLMGLRPEYESV+  LLHRSPLPSLD AIQEILFEEK LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FID
Subjt:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID

Query:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
        CPKIECRYC+K GHI+DNCPIKPPRPRSYST AKNFTKPR
Subjt:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
A0A5A7VBM6 Integrase, catalytic core6.1e-6890.71Show/hide
Query:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID
        +LQPIWTQ DQAKISKDHLRLIKVLMGL PEYESVR  LLHRSPLPSLD AIQEILFEEK LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FID
Subjt:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID

Query:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
        CPKIECRYC+K GHI+DNCPIKPPRPRSYSTRAKNFTK R
Subjt:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
A0A5D3DCR3 Zinc finger, CCHC-type4.7e-6890Show/hide
Query:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID
        +LQPIWTQ DQA ISKDHLRLIKVLMGLRPEYESV+  LLHRSPLPSLD AIQEILFEEK LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FID
Subjt:  MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFID

Query:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
        CPKIECRYC+K GHI+DNCPIKPPRPRSYST AKNFTKPR
Subjt:  CPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCAACCTATCTGGACTCAACATGATCAAGCTAAAATTAGTAAAGATCATCTTCGTCTTATTAAAGTCCTTATGGGACTTCGTCCAGAATATGAATCTGTT
AGGACTACCTTGTTACACCGCAGTCCCTTGCCCTCATTGGATACTGCTATCCAAGAAATATTATTTGAAGAAAAACATCTTGGCATCAATCTCTCTAAACATTCT
GATGTTGTTCTTGCCAGCACTTATTCACCACCTAGAGCATCAAGCACATTTTGTAAGAATTGTAAGCTCACTGGTCATCAATTTATTGATTGTCCTAAAATAGAA
TGCAGGTACTGCTATAAACTAGGTCATATTATGGATAATTGTCCCATAAAACCACCTCGACCTCGAAGCTATTCTACAAGAGCAAAGAACTTCACTAAACCCAGG
mRNA sequenceShow/hide mRNA sequence
GTGAAATTGCTCGTCTAATTAGCTCTAATTATATTACATGGGAAAATCAAATAAAAAGCTTCTTAATTGGACAAAAATTATGGCGTATTGTCACAGGTGATATTA
CCAAGCCGACCAAACAAGACAAGGAAGATGATGACAAATTTATCGAACACCTTGAAGAATGGGACAACAAAAATCATCAGATTATCACCTGGCTTAGTAACACAT
CAATTCCTGCTATCTATACACAATTTGATGCTTCTAAAAGTGCTAAGGAGTTATGGGATTTTCTGTCTACACGATTTAAGTCCGTCGGATTAGTGCATTACTATC
AGTTGCACAATAATCTTGTTAATCTTAATCAAGAAGCTGGTCAATCAGTCAATGAGTAATTAGTCATGCTTCAACCTATCTGGACTCAACATGATCAAGCTAAAA
TTAGTAAAGATCATCTTCGTCTTATTAAAGTCCTTATGGGACTTCGTCCAGAATATGAATCTGTTAGGACTACCTTGTTACACCGCAGTCCCTTGCCCTCATTGG
ATACTGCTATCCAAGAAATATTATTTGAAGAAAAACATCTTGGCATCAATCTCTCTAAACATTCTGATGTTGTTCTTGCCAGCACTTATTCACCACCTAGAGCAT
CAAGCACATTTTGTAAGAATTGTAAGCTCACTGGTCATCAATTTATTGATTGTCCTAAAATAGAATGCAGGTACTGCTATAAACTAGGTCATATTATGGATAATT
GTCCCATAAAACCACCTCGACCTCGAAGCTATTCTACAAGAGCAAAGAACTTCACTAAACCCAGGAA
Protein sequenceShow/hide protein sequence
MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFIDCPKIE
CRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR