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MELO3C031064 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C031064
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr05:2342282..2342830
RNA-Seq ExpressionMELO3C031064
SyntenyMELO3C031064
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.5e-3884.54Show/hide
Query:  YVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN
        YVFGKDRAT ARSE FADVGSNVPN+FN  V L DSHD+DIPMMYSQGVHMSPDEMFGIRAGQASER+NCSSGSKRK+GS+ YETVEVI+S +EFGN
Subjt:  YVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-3580.81Show/hide
Query:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN
        +SYVFGKD+AT ARSE FADVGSN+PN+FND V LGDSH EDIP MYSQGV MS DEMFG RAGQASERRNCSS SKRK+GS+ YETVEVIRS M+FGN
Subjt:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN

KAA0056515.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]4.3e-3883.84Show/hide
Query:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN
        +SYVFGKDRAT  RSE F+ VGSNVPN+FND V LGDSH++DIPMMYSQGVHMS DEMFGIRAGQASERRNCSSGSKRKRGS+ YE VEVIRSVM+FGN
Subjt:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN

TYK21967.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]2.6e-3581.72Show/hide
Query:  KDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN
        KDR T ARSE FAD+GSNV N+FND V LGDSHD+DIPMMYSQGVHMSPDE+FGIRAGQASER+ CSSGSKRKRGSE YETVE+I+S +EFGN
Subjt:  KDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]3.2e-4188.89Show/hide
Query:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN
        +SYVFGKDRATGARSE F +VGSNV N+FND++ LGDSHDEDIP MYSQGVHMSPDEMFGIRAGQASERRNCSS SKRKRGSERYETVEVIRSVMEFGN
Subjt:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.5e-4188.89Show/hide
Query:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN
        +SYVFGKDRATGARSE F +VGSNV N+FND++ LGDSHDEDIP MYSQGVHMSPDEMFGIRAGQASERRNCSS SKRKRGSERYETVEVIRSVMEFGN
Subjt:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN

A0A5A7SQU2 Putative nuclease HARBI11.2e-3884.54Show/hide
Query:  YVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN
        YVFGKDRAT ARSE FADVGSNVPN+FN  V L DSHD+DIPMMYSQGVHMSPDEMFGIRAGQASER+NCSSGSKRK+GS+ YETVEVI+S +EFGN
Subjt:  YVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN

A0A5A7U0H7 Retrotransposon protein1.5e-4188.89Show/hide
Query:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN
        +SYVFGKDRATGARSE F +VGSNV N+FND++ LGDSHDEDIP MYSQGVHMSPDEMFGIRAGQASERRNCSS SKRKRGSERYETVEVIRSVMEFGN
Subjt:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN

A0A5A7USN6 Putative nuclease HARBI12.1e-3883.84Show/hide
Query:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN
        +SYVFGKDRAT  RSE F+ VGSNVPN+FND V LGDSH++DIPMMYSQGVHMS DEMFGIRAGQASERRNCSSGSKRKRGS+ YE VEVIRSVM+FGN
Subjt:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN

A0A5D3CVB7 Retrotransposon protein5.7e-3680.81Show/hide
Query:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN
        +SYVFGKD+AT ARSE FADVGSN+PN+FND V LGDSH EDIP MYSQGV MS DEMFG RAGQASERRNCSS SKRK+GS+ YETVEVIRS M+FGN
Subjt:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTATGTTTTTGGCAAAGATCGGGCAACGGGAGCACGTTCAGAGATCTTTGCTGATGTAGGATCTAATGTGCCGAACGTGTTTAATGACAGTGTTTCCCTT
GGTGATTCACATGATGAAGACATTCCGATGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATGTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGA
AATTGTTCAAGTGGAAGTAAGAGGAAACGAGGTAGCGAACGTTATGAAACGGTAGAGGTGATCAGGAGTGTAATGGAATTTGGAAATTAG
mRNA sequenceShow/hide mRNA sequence
CCAAAGGCCTTCTACACAAATCATTTCCATATTATGCTGATATGTCCTATGTTTTTGGCAAAGATCGGGCAACGGGAGCACGTTCAGAGATCTTTGCTGATGTAG
GATCTAATGTGCCGAACGTGTTTAATGACAGTGTTTCCCTTGGTGATTCACATGATGAAGACATTCCGATGATGTATAGCCAAGGAGTGCATATGTCACCAGATG
AGATGTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAACGAGGTAGCGAACGTTATGAAACGGTAGAGGTGATCA
GGAGTGTAATGGAATTTGGAAATTAGCAATTAAAGGCAATTGCAGATTGGCAAAAGAGAAACGTGCAATGGAGGTCGAAATGTGTGTTGAAGTCCAAGATATCCC
TGAACTACGAAGCCAAGATAGGGCAAAGCTTATGCAAATCCTATTGCGTAGTGTGGAGGCCATTGAGGGATTCTTGTCGATTCCAACAGAACTTAAATTGGAGTA
TTGCAATATTCTCTTGCAAAATAA
Protein sequenceShow/hide protein sequence
MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRKRGSERYETVEVIRSVMEFGN