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MELO3C031429 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C031429
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase
Genome locationchr05:16570294..16572190
RNA-Seq ExpressionMELO3C031429
SyntenyMELO3C031429
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032947.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-1291.67Show/hide
Query:  LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT-RNPLL
        LASSSHESFKQSRQIQ+QKSVVRRLHAIFRSKVAGSPGGGVT   PLL
Subjt:  LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT-RNPLL
KAA0037607.1 uncharacterized protein E6C27_scaffold277G002620 [Cucumis melo var. makuwa]2.9e-1265.38Show/hide
Query:  VSLGLLVKSVNFEVHFI--------------------------LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAG
        VSLGLLVKSVNFEVHF+                          LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAG
Subjt:  VSLGLLVKSVNFEVHFI--------------------------LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAG
KAA0045362.1 putative mitochondrial protein [Cucumis melo var. makuwa]6.4e-1289.58Show/hide
Query:  LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVTRNPLLN
        LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPG GVT  P  N
Subjt:  LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVTRNPLLN
KAA0056677.1 hypothetical protein E6C27_scaffold73G00010 [Cucumis melo var. makuwa]3.8e-12100Show/hide
Query:  LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT
        LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT
Subjt:  LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT
KAA0063130.1 hypothetical protein E6C27_scaffold381G00040 [Cucumis melo var. makuwa]2.4e-1195.24Show/hide
Query:  LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT
        LASSSHESFKQ+RQIQVQKSVVR+LHAIFRSKVAGSPGGGVT
Subjt:  LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT
TrEMBL top hitse value%identityAlignment
A0A5A7SUD6 Reverse transcriptase8.2e-1391.67Show/hide
Query:  LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT-RNPLL
        LASSSHESFKQSRQIQ+QKSVVRRLHAIFRSKVAGSPGGGVT   PLL
Subjt:  LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT-RNPLL
A0A5A7T7T0 Retrotrans_gag domain-containing protein1.4e-1265.38Show/hide
Query:  VSLGLLVKSVNFEVHFI--------------------------LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAG
        VSLGLLVKSVNFEVHF+                          LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAG
Subjt:  VSLGLLVKSVNFEVHFI--------------------------LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAG
A0A5A7TPR4 Putative mitochondrial protein3.1e-1289.58Show/hide
Query:  LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVTRNPLLN
        LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPG GVT  P  N
Subjt:  LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVTRNPLLN
A0A5A7UPX3 Uncharacterized protein1.8e-12100Show/hide
Query:  LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT
        LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT
Subjt:  LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT
A0A5A7V7A9 RT_RNaseH domain-containing protein1.2e-1195.24Show/hide
Query:  LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT
        LASSSHESFKQ+RQIQVQKSVVR+LHAIFRSKVAGSPGGGVT
Subjt:  LASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGCTGAGCGGGCTCCACTACGACAAAGACGACGGGAGTGCTGGGCGAGCCCAATACATCGTAGAGCTTGTAAACGTTGTTGTACTGGGTGTACCCTACAC
AACAGTCACTCACTGAGCTTCATAGTTCACCCTTTCCAAAATGTTTTACCCATTTTTCAGGTGTCTTTAGGTTTACTCGTGAAATCAGTAAATTTTGAGGTACAC
TTCATATTGGCAAGTTCATCACATGAAAGTTTTAAGCAGAGTCGACAGATACAAGTACAGAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTCGGTCTAAAGTA
GCAGGTAGTCCGGGAGGGGGTGTGACACGTAATCCATTGTTAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAAGTTGGAGTAAATTCGGATATTCATTGGGTGCTTTTTGATGAAGAAAACAGGGCAGTTGGTTTTCACTCAAAATCAGGAGGTCTATGGTTTTTCTTG
GACAAGTTAAAGAGGTCGTGTACGAATGATTCTGGAAGTGGTTCTGTTTCGAGGATGATTTATGAAATTTTCATTAACTACATGACTGAGATCTTGAGCTTGAGG
CTAGAGATTACCGTGTGCACATTGGTTAGATTCTGTTGTTGACGTTGAGTGTACTCCGTAACAACGATGCTGTCATGAGGGCTGAGCGGGCTCCACTACGACAAA
GACGACGGGAGTGCTGGGCGAGCCCAATACATCGTAGAGCTTGTAAACGTTGTTGTACTGGGTGTACCCTACACAACAGTCACTCACTGAGCTTCATAGTTCACC
CTTTCCAAAATGTTTTACCCATTTTTCAGGTGTCTTTAGGTTTACTCGTGAAATCAGTAAATTTTGAGGTACACTTCATATTGGCAAGTTCATCACATGAAAGTT
TTAAGCAGAGTCGACAGATACAAGTACAGAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTCGGTCTAAAGTAGCAGGTAGTCCGGGAGGGGGTGTGACACGTA
ATCCATTGTTAAACTGA
Protein sequenceShow/hide protein sequence
MRAERAPLRQRRRECWASPIHRRACKRCCTGCTLHNSHSLSFIVHPFQNVLPIFQVSLGLLVKSVNFEVHFILASSSHESFKQSRQIQVQKSVVRRLHAIFRSKV
AGSPGGGVTRNPLLN