; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C031433 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C031433
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr05:17116989..17119841
RNA-Seq ExpressionMELO3C031433
SyntenyMELO3C031433
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031723.1 retrotransposon protein [Cucumis melo var. makuwa]8.8e-3686.6Show/hide
Query:  GDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLEL
        GDGNEEF PV SQGIDLSQDDV ASRPSCASEGR GSSGSKRKRGSQR +DVEGIHLAL+Q NEQL MIAEWP  ALANDNHVRMEFF ILREM EL
Subjt:  GDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLEL

KAA0049990.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-4592.16Show/hide
Query:  SQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFG
        + DDVHASRPS ASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFF IL EMLELMVWIGRYCK IFCLVWTTFG
Subjt:  SQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFG

Query:  TT
         +
Subjt:  TT

KAA0054705.1 retrotransposon protein [Cucumis melo var. makuwa]6.7e-3684.69Show/hide
Query:  MGDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLEL
        MGDGNE+F PV SQGIDLSQDDV ASRPS ASEGRTGSSGSKRKRGSQR  DVE IHLAL+QTNEQL  IAEWP C LANDNHVR EFFCILREM EL
Subjt:  MGDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLEL

KAA0067583.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-3871.67Show/hide
Query:  MGDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMV
        MGDGNE+F PV SQG+D+SQDDV ASRPS ASEGRTGSSGSKRKRGSQR  DVE I+L L+QTNEQL  IAEWP   LANDNH    F         L V
Subjt:  MGDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMV

Query:  WIGRYCKGIFCLVWTTFGTT
        WIGRYCKGIFCLVWTTFG +
Subjt:  WIGRYCKGIFCLVWTTFGTT

TYK07718.1 retrotransposon protein [Cucumis melo var. makuwa]5.3e-4996.08Show/hide
Query:  SQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFG
        + DDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFG
Subjt:  SQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFG

Query:  TT
         +
Subjt:  TT

TrEMBL top hitse value%identityAlignment
A0A5A7SNB3 Retrotransposon protein4.2e-3686.6Show/hide
Query:  GDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLEL
        GDGNEEF PV SQGIDLSQDDV ASRPSCASEGR GSSGSKRKRGSQR +DVEGIHLAL+Q NEQL MIAEWP  ALANDNHVRMEFF ILREM EL
Subjt:  GDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLEL

A0A5A7U3X7 Retrotransposon protein2.9e-4592.16Show/hide
Query:  SQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFG
        + DDVHASRPS ASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFF IL EMLELMVWIGRYCK IFCLVWTTFG
Subjt:  SQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFG

Query:  TT
         +
Subjt:  TT

A0A5A7VHM3 Retrotransposon protein9.1e-3971.67Show/hide
Query:  MGDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMV
        MGDGNE+F PV SQG+D+SQDDV ASRPS ASEGRTGSSGSKRKRGSQR  DVE I+L L+QTNEQL  IAEWP   LANDNH    F         L V
Subjt:  MGDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMV

Query:  WIGRYCKGIFCLVWTTFGTT
        WIGRYCKGIFCLVWTTFG +
Subjt:  WIGRYCKGIFCLVWTTFGTT

A0A5D3B6Y0 Retrotransposon protein3.2e-3684.69Show/hide
Query:  MGDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLEL
        MGDGNE+F PV SQGIDLSQDDV ASRPS ASEGRTGSSGSKRKRGSQR  DVE IHLAL+QTNEQL  IAEWP C LANDNHVR EFFCILREM EL
Subjt:  MGDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLEL

A0A5D3C970 Retrotransposon protein2.6e-4996.08Show/hide
Query:  SQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFG
        + DDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFG
Subjt:  SQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFG

Query:  TT
         +
Subjt:  TT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGATGGAAATGAGGAGTTCTCGCCCGTGAACAGCCAGGGGATTGACCTGTCGCAGGACGATGTACACGCATCACGACCTTCTTGCGCTTCAGAGGGTAGG
ACCGGATCGAGTGGATCCAAAAGGAAGAGGGGAAGTCAGCGAAAGGTGGATGTTGAAGGCATACATCTGGCGCTCAACCAAACAAACGAGCAACTCATGATGATT
GCAGAGTGGCCTACATGCGCCCTTGCCAATGACAACCATGTGCGCATGGAATTCTTCTGCATATTGCGTGAGATGCTAGAACTAATGGTTTGGATAGGGCGCTAT
TGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCGGGACAACTATCTTTTTCCTTCATAATGTTTATCTAAAATTAAGGAAAATAGTCACAATTTCACCCAAG
CGTTATAACAGTCAAAGTCAGAAAGAAAAAGGCTTGCTAGAAATAATTACTACCCTTCCACTTGTGAGCCAACCTCTTCCACTTTGTGATATACGACCATCATCA
AGTAGTACTCTCAAACTCTTTCCCTGTGGTAGCAACATTTACTTCCAGTCCATTCCCCTTACCTATGATCTCAAAGATAAGAATCATTATGTTTCGAAAGTGAAA
AGACAATATGAAAACTAA
mRNA sequenceShow/hide mRNA sequence
CATCGATTGTATCTTTTGTTTGTGACTGTTAAATGTCAAAATGTGAAATTGTGAAATTACTAACGTACTCCATGTATTTCTTGTAACTTTTCATTCTCAGTATGT
CAACCTCAAACTGTGCCCTGAGACATGTCTGGACGAAGGAGGAGGAGGGCACTCTTGTGGAATGTTTAACGGAGCTGGTGTCGAGGGGATGGAAATCGGATAATG
GTACGTTTCGGCCAGGGTACCTGGTCCCGTAGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTCCACGCAACGACTGTAATTGACAGTAGAATAAAGA
CACTGAAGCAGACATTCCAGGCCATCGCCGAAATGCGGGGTCCAGCGTGTAGTGGCCTTGGGTGGAACGATAAAGAGAAATGTATCATTGCGGAGAAAGGATTAT
TTGATAATTGGGTTAGGTCGTATCCTGCAGCGAAGGAACTCCTGAACAAACTGTTTCCGTATTACGACGAACTTACATATGTGTTCGGTCGCGATAAGGCGACGG
GTCGGTTCGCTGAGACATTTGCCGACGTGGGTCTAACGAGCTTAACGGGTATGACGGATTTGATATGGGGGATGGAAATGAGGAGTTCTCGCCCGTGAACAGCCA
GGGGATTGACCTGTCGCAGGACGATGTACACGCATCACGACCTTCTTGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAAAGGAAGAGGGGAAGTCAGCG
AAAGGTGGATGTTGAAGGCATACATCTGGCGCTCAACCAAACAAACGAGCAACTCATGATGATTGCAGAGTGGCCTACATGCGCCCTTGCCAATGACAACCATGT
GCGCATGGAATTCTTCTGCATATTGCGTGAGATGCTAGAACTAATGGTTTGGATAGGGCGCTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCGGGAC
AACTATCTTTTTCCTTCATAATGTTTATCTAAAATTAAGGAAAATAGTCACAATTTCACCCAAGCGTTATAACAGTCAAAGTCAGAAAGAAAAAGGCTTGCTAGA
AATAATTACTACCCTTCCACTTGTGAGCCAACCTCTTCCACTTTGTGATATACGACCATCATCAAGTAGTACTCTCAAACTCTTTCCCTGTGGTAGCAACATTTA
CTTCCAGTCCATTCCCCTTACCTATGATCTCAAAGATAAGAATCATTATGTTTCGAAAGTGAAAAGACAATATGAAAACTAA
Protein sequenceShow/hide protein sequence
MGDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMVWIGRY
CKGIFCLVWTTFGTTIFFLHNVYLKLRKIVTISPKRYNSQSQKEKGLLEIITTLPLVSQPLPLCDIRPSSSSTLKLFPCGSNIYFQSIPLTYDLKDKNHYVSKVK
RQYEN